Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03699 ATGAGTTTCACTGACCATTTTCCACCCTTCATGATGTCACCACTACCATATGCCGAAGAAAGTGATGCCATTGACGTGAGGCTTCAATTCCCAATGAACAACGAACCATTCGATCCACATTCAGCATTGGATCAACCCCCTTCATCCAAGAGGGCTAGGACTTCTGAGACATGCCCTCCAAGGATGATTCAGCACCCACCAAACCCCTCAGTCAACAAAGGAACCAGCCACATATTCTTCAAGACCCGCATTTGTGCAAAGTTCAGACTTGGTGCTTGTAGGAACGGTGAGAATTGTAATTTTGCACATGGTGTTGAGGACATGAGGCAGCCACCACCAAATTGGCAGGACCTTGTTGGTTTACGCAATGAAGATCGGTCTTCATCGGGGAATTGGGATGATGACCAGAAAATCATACATAAGATGAAGCTGTGTAGGAAGTTTTACAATGGGGAGGAATGTCCTTATGGTGATAAGTGTAGTTTTCTTCATGAAGATCCTGCCAAGTTCAGGGATGATGGTGGGAGGTTCCGGGAGAGTTCTGCAATAAGCATAGGAACTAATGGATCCCCAAAGTCATATGGGGATGGCTCTAATAATTCAGAAGGTAATAGGGCTGTGAACACTGGCTTGAATGTTTCAAGGGGAAATGTAAAGTCCACTTATTGGAAGACTAAACTGTGTATCAAGTGGGAGACAACAGGGCACTGCCCCTTTGGGGATGACTGTCACTTTGCCCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGACGCATTGAAGTAGAAACTGTAGGTGCCATTGCAAATTCAACTAAAGCTACCATTGCAACTTTACCAAAAGTGTCATCAGTGTCTACCAATGTTGTACCTCCTAGCTACACAGCAAGTCTACCTCTGGTAAATGAAGAGGAGCAGGGTAAGCAGTATTTACTGAAGTGGAAAGCAACCAAGAAGATCAATCGAATTTATGGTGATTGGCTTGATGATTTACCGCTTGTTCACAATCTGCCTAGTAGAGTGGAGACTTGA 1029 0.449 MSFTDHFPPFMMSPLPYAEESDAIDVRLQFPMNNEPFDPHSALDQPPSSKRARTSETCPPRMIQHPPNPSVNKGTSHIFFKTRICAKFRLGACRNGENCNFAHGVEDMRQPPPNWQDLVGLRNEDRSSSGNWDDDQKIIHKMKLCRKFYNGEECPYGDKCSFLHEDPAKFRDDGGRFRESSAISIGTNGSPKSYGDGSNNSEGNRAVNTGLNVSRGNVKSTYWKTKLCIKWETTGHCPFGDDCHFAHGQAELQVPGGRIEVETVGAIANSTKATIATLPKVSSVSTNVVPPSYTASLPLVNEEEQGKQYLLKWKATKKINRIYGDWLDDLPLVHNLPSRVET* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03699 342 ProSiteProfiles Zinc finger C3H1-type profile. 79 106 IPR000571 GO:0046872
Rops2g03699 342 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Rops2g03699 342 PANTHER CCCH ZINC FINGER/TIS11-RELATED 46 171 IPR045877 GO:0003729
Rops2g03699 342 MobiDBLite consensus disorder prediction 31 73 - -
Rops2g03699 342 SUPERFAMILY CCCH zinc finger 77 110 IPR036855 GO:0046872
Rops2g03699 342 FunFam Zinc finger CCCH domain-containing protein 39 136 168 - -
Rops2g03699 342 MobiDBLite consensus disorder prediction 180 208 - -
Rops2g03699 342 Gene3D - 72 110 - -
Rops2g03699 342 Gene3D - 216 254 - -
Rops2g03699 342 Gene3D - 136 168 - -
Rops2g03699 342 Pfam CCCH-type zinc finger 143 164 IPR041367 -
Rops2g03699 342 MobiDBLite consensus disorder prediction 181 208 - -
Rops2g03699 342 SUPERFAMILY CCCH zinc finger 221 253 IPR036855 GO:0046872
Rops2g03699 342 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Rops2g03699 342 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Rops2g03699 342 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Rops2g03699 342 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Rops2g03699 342 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Rops2g03699 342 FunFam Zinc finger CCCH domain-containing protein 217 254 - -
Rops2g03699 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 249 IPR000571 GO:0046872
Rops2g03699 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 104 IPR000571 GO:0046872
Rops2g03699 342 FunFam Zinc finger CCCH domain-containing protein 74 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03699 Rops-Chr2 68399082 68401524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03699 224 253 C3H Transcription Factor Family AT1G68200 63.333 2.13e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g03699 zf-CCCH 4.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03699 - - gmx:100793865 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03699 2 68399082 68401524 Rops2g03699 2 68399082 68401524 ECH