Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03686 ATGGCATGGTCTGATGCAACTTCTAACCACTTCGCTAACAAACCAACACGCTCCCCTCGGCCACGTTACACCCCTCCACACCGTTCTCATTACAACAATGAAGCTTCTTTCCCTTTGACCGACGACTCTAACCACTACGGGTTCAACCGTTACGGACCAACCCCACGTGTCCGACGGTTTCCTCGCCCTGAATATTCCCGTAACGGTGAATCTTCTAACCGATTCCCGTTTGACGAGCTAGAGGAAGAGAAAAACGACGGCGTTTCGAATTTCGATGTGTATGAATCGGTCCCGGTGGAGGCGAGTGGCGAGAACGTGCCACCGCCGGTGAACGCGTTCGCGGAAACTGACCTGGATGAAGATTTGAAGAAGAATATAGAGAGATGTAAGTACGTGAAACCCACACCGGTTCAGCGTCACGCGATTCCCATTGCTGTTGCGGGTCGTGACTTGATGGCTTGTGCGCAAACCGGTTCGGGTAAAACGGCTGCGTTTTGTTTTCCCATTATATCTGGGATTTTGAAGGCTCGTTCTGGGTTTTCCTCCATGCCTCGTCGTGGTGCCATTGTTGCATACCCCACTGCGCTTATACTTTCTCCTACTAGGGAGTTAACGTGTCAGATCCATGCTGAAGCGAACAAGTTTGCATATCAAACAGGAGTGAAGATTGTGGTTGTTTATGGAGGTGCTTCCGTTGCTCAACAGCTTCGAAATTTGGAGAAAGGGGTTGATATATTGGTTGCAACTCCTGGGAGGTTGGTGGATATCATTGAGAGAGAAAGGGTTTCTTTAAAGAGGATAAAATATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAGCATCAAATACGTAAGATTGTGGAACCGATGCAAATGCCCCCACCGGGTGTTAGACAAACAATGCTTTTTAGTGCTACATTCCCCAATGATATACAGAAGCTTGCGTCTGACTTTCTATCCAACTACATATTCCTGGCCGTGGGAAGGGTTGGTTCAAGCACTGAATTGATTCTACAAAAAATTGAACTTGTGCATGATACAGAAAAAGGAAACCATCTCTTGGAGGTTCTTGGACGCCAAAGGGAGCATGGAGCTCTTGGAAAGCATTCTCTGACTCTTGTATTTGTGGAAACAAAGAAAGGAGCAGATTCTTTGGAAAATTGGTTGTCGAGAAAAGGATTCCCTGCTATTGCAATACATGGTGATAAAGTTCAAATGGAAAGGGAACGAGCTTTAAGCTCTTTCAAACGTGGTTTTACTCCAATTTTGGTGGCAACGGATGTTGCTTCCCGAGGATTGGATATCCCTCATGTTGCTCATGTTATAAACTTCGACTTGCCTAAAAACATAGATGACTACGTACATAGGATTGGCAGAACAGGGCGTGCTGGTAAATCTGGTTTAGCCACTGCCTTCTTCAGCAACAAGAACATCCCTCTTGCAAAGGCACTTGTTGGACTTTTTCAGGGAGCAAACCAGGAAGTCCCATCTTGGCTCGGCCAATTCTCTGAGTGTTCATCACCCGGTGGTGGTCATAGCCATGGAGCTCCACGGCACGGCAGAGGCAACTTTGGCGGTCGTGATTTCCGAAATGTCACTCAACCTGAGGTGGAGAATTACAACTACCTCGGTACTAATGGCAATGCAGACCATGCTGTGGACTATACTGATAATACCTCTTATGACATCAAAAACTCTGCTAGTGATTCTTCTTTTAACACCAAAAACTCTGCTAGTGATTCTTCTTTTGACATCCCGAATGCAGTTCATGCGGGCAGTTATAATTATACTGATGCTAATGTTGATTTATATGGAGGTAGGAAAATTGAAGATGGCCCATGTGGTTATGCAGCTGTTGTTCCCACTGGATGGGAATAG 1890 0.4608 MAWSDATSNHFANKPTRSPRPRYTPPHRSHYNNEASFPLTDDSNHYGFNRYGPTPRVRRFPRPEYSRNGESSNRFPFDELEEEKNDGVSNFDVYESVPVEASGENVPPPVNAFAETDLDEDLKKNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKARSGFSSMPRRGAIVAYPTALILSPTRELTCQIHAEANKFAYQTGVKIVVVYGGASVAQQLRNLEKGVDILVATPGRLVDIIERERVSLKRIKYLALDEADRMLDMGFEHQIRKIVEPMQMPPPGVRQTMLFSATFPNDIQKLASDFLSNYIFLAVGRVGSSTELILQKIELVHDTEKGNHLLEVLGRQREHGALGKHSLTLVFVETKKGADSLENWLSRKGFPAIAIHGDKVQMERERALSSFKRGFTPILVATDVASRGLDIPHVAHVINFDLPKNIDDYVHRIGRTGRAGKSGLATAFFSNKNIPLAKALVGLFQGANQEVPSWLGQFSECSSPGGGHSHGAPRHGRGNFGGRDFRNVTQPEVENYNYLGTNGNADHAVDYTDNTSYDIKNSASDSSFNTKNSASDSSFDIPNAVHAGSYNYTDANVDLYGGRKIEDGPCGYAAVVPTGWE* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03686 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 329 IPR014001 -
Rops2g03686 629 MobiDBLite consensus disorder prediction 1 15 - -
Rops2g03686 629 Pfam DEAD/DEAH box helicase 135 318 IPR011545 GO:0003676|GO:0005524
Rops2g03686 629 SMART helicmild6 387 468 IPR001650 -
Rops2g03686 629 CDD DEADc_DDX3_DDX4 113 335 IPR044763 GO:0003724|GO:0005524
Rops2g03686 629 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Rops2g03686 629 MobiDBLite consensus disorder prediction 29 43 - -
Rops2g03686 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 485 IPR027417 -
Rops2g03686 629 SMART ultradead3 130 344 IPR014001 -
Rops2g03686 629 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 83 505 - -
Rops2g03686 629 FunFam Probable ATP-dependent RNA helicase DDX4 76 331 - -
Rops2g03686 629 FunFam ATP-dependent RNA helicase RhlB 332 510 - -
Rops2g03686 629 Gene3D - 332 509 IPR027417 -
Rops2g03686 629 Pfam Helicase conserved C-terminal domain 372 468 IPR001650 -
Rops2g03686 629 CDD SF2_C_DEAD 341 477 - -
Rops2g03686 629 MobiDBLite consensus disorder prediction 1 82 - -
Rops2g03686 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 507 IPR001650 -
Rops2g03686 629 Gene3D - 70 331 IPR027417 -
Rops2g03686 629 MobiDBLite consensus disorder prediction 510 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03686 Rops-Chr2 68243154 68246095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03686 109 500 Eukaryotic Initiation Factors Gene Family AT3G19760 31.043 7.95e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03686 K11594 - gmx:100791226 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03686 2 68243154 68246095 Rops2g03686 2 68243154 68246095 ECH