Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03664 ATGTCTAGCTGCGGCGTCGATGTTGCTCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTCTTTGATATTGTGACCGTTCGATGTGGTCACTGCACCAATCTATGGTCCGTGAATATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCACCTGGCCACTGTAATCCTGAGTATAGGATTGATACTGGCTCCACTTCCAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCGTGTAACCGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCCAATAATCCTGATATCAGTCACCGAGAAGCCTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCCCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGAGAATGCCTCTGAGAAGCATTTGATGTCAAGGGCTGCGCTATTGAACAAATGA 561 0.4759 MSSCGVDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPGHCNPEYRIDTGSTSKCNNRIAMRAPTTRVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENASEKHLMSRAALLNK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03664 186 CDD HMG-box_SF 113 149 - -
Rops2g03664 186 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Rops2g03664 186 Gene3D High mobility group box domain 97 180 IPR036910 -
Rops2g03664 186 FunFam axial regulator YABBY 5-like 97 155 - -
Rops2g03664 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Rops2g03664 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03664 Rops-Chr2 67861566 67865385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03664 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 78.395 1.89e-92 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops2g03664 YABBY 2.7e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03664 K25796 - gmx:100804731 377.096