Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03650 ATGGAGCTTCAGTTGGGTCTAGCTCTCCCAACCAATCCCTCTAAACTTGTCGACCACAATTCTCGTGCCTTCCACAACAAACGTACTTTCTCACAACTCTTTGAGCATGAAAGCACCAACAGTGACGTTATGCTTCCTACTCTGTCTCTCCTCCCATTAACGCCTTCTAAGAATGATGAAGAAGAAGAATCTTTGGTGGGTTGGCCACCTGTAAATTATTGGAGGAAGAAACTTCGTACCGATAACTATGTGGACGACGAGGTTGTTGAGAATGATCACATGGTTTGGATTCGAGGACATGGTTCTTCTGGTGATGGACGTGCACCCACACGATCGAATAACCTCTACGTGAAGGTGAAGATGGAGGGTGTAGGAATTGCTCGAAAGGTTAATCTCAACATGCACCATTCATTTCAGACGCTCAAGGAAACCTTGATGAACATGTTTGGGAAATGTCATCAACAATCAAACGGCTATGAACTGGCTTATCAGGACAAAGAAGGTGATTGGCTTCTTGCTGAAGATGTGCCATGGAGAAGTTTTATTCAGTGTGTGCAACGGCTCAAATTGTTGAAGAGAAAAGGATGA 588 0.4422 MELQLGLALPTNPSKLVDHNSRAFHNKRTFSQLFEHESTNSDVMLPTLSLLPLTPSKNDEEEESLVGWPPVNYWRKKLRTDNYVDDEVVENDHMVWIRGHGSSGDGRAPTRSNNLYVKVKMEGVGIARKVNLNMHHSFQTLKETLMNMFGKCHQQSNGYELAYQDKEGDWLLAEDVPWRSFIQCVQRLKLLKRKG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03650 195 Pfam AUX/IAA family 22 153 IPR033389 -
Rops2g03650 195 Pfam AUX/IAA family 156 193 IPR033389 -
Rops2g03650 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 193 IPR003311 GO:0005634|GO:0006355
Rops2g03650 195 Gene3D - 109 195 - -
Rops2g03650 195 ProSiteProfiles PB1 domain profile. 114 195 IPR000270 GO:0005515
Rops2g03650 195 SUPERFAMILY CAD & PB1 domains 110 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03650 Rops-Chr2 67578289 67579641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03650 78 192 B3 DNA Binding Superfamily AT5G20730 29.752 2.96e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops2g03650 AUX_IAA 3.9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03650 K14484 - gmx:100808466 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03650 2 67578289 67579641 Rops2g03650 2 67578289 67579641 ECH