Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03567 ATGGGTTCATCGTCTAGTAAACATGGGTCTCGCCCTTCTTCTAGTCACAGGGTCAACCGTTTCAGACTATCTTCTCTTCTCTGTGGAACCTCTACCTCACGCTCCATTTATCAGACGGAAGAACATTCATCTGAACTTCAGGTTGATTCTGCAAGAGATTTTGATGGTGAAATTCAGAAAGTCACTGAGGAAACGTCTTTATCATGTACAGAAACTAGAATTAGCTGCTGCCCTCATGCTGAAACTACTACCTCATCTGATATGAGAACTGAGTTCAACGGGAATACTACTGTTGAAAGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCGTTTGTTGAACAACAGTCTTCAAATCCAGTTTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTCTCTCAAATCTCTCGTGAGACAATCCATCCATGGAGTTCAGCCCCTCAAGAGAATGGAAATTCCAGTTCCAGTGAAATTTCTGTTGAGAATCACAGTGGTGCATTCATATCTATCCAGAGTACTTCTTCCAATCCTGTTGCTCAGGTTTCCAATTTACCTGCAACTCCTCAAGTGCCTGAAGACGAACCTCGTCACGAGACAATACCTTCTGGTTTAGGTATTGTTGTGTCCAATCGGGAAAGAGGGCAGGGAAATAACGGTGTGCTTCAGGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCAGATGCCAATGATCATGATCCCAGAAGGAATGGCAGAAGAGTATTTTGGGATGCCTTTTCACGACGTAGTTCTAGAAGGCTCGGTGATTCTCCTACCATTGTCTTCTCCACCGGAGGTGCTGATGATCCAGGATCTCAAGATCAATGGCTTGTTGATTTTGGTGGGGATTTACCAAATGATGGGGTTGGGGATGCATCTGGATATATGGGAAGTAGACTTCACAGATTTAATGAACGAATGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGTTTTGATGAGATTGGTCGGTGGAATTCTTCATGCCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCAATGGCCGAGGAATCTGGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGTTCACTTTCCCTTTCCATGGTCTCACTCCCAGCACCTGAATCTGTTGTGGACTCCTTTCCTTTGAAGTCTCACAAAAAGGTTGATGTAGGTGCTGGAGGCAATGAAGCTGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAAACATGAGTATCACATGTCTTGTGTGGATAAGTGGCTTAAGGAAATACATGGTGTATGTCCTCTGTGTCGTGGCGATGTTTGTGGAGGGTTCAGAGAGTCTTCTGCCCACTCAGAAGTCCTGCCTCGTTGA 1617 0.4453 MGSSSSKHGSRPSSSHRVNRFRLSSLLCGTSTSRSIYQTEEHSSELQVDSARDFDGEIQKVTEETSLSCTETRISCCPHAETTTSSDMRTEFNGNTTVESSSRNVATSSQRKCLSECKELVPPYQVSAGHSRHESYSDSSNTASTSFVEQQSSNPVSVNVSANKDAVNNVDDPVVSGVSQISRETIHPWSSAPQENGNSSSSEISVENHSGAFISIQSTSSNPVAQVSNLPATPQVPEDEPRHETIPSGLGIVVSNRERGQGNNGVLQVDVVTISSNILSGSNADANDHDPRRNGRRVFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDQWLVDFGGDLPNDGVGDASGYMGSRLHRFNERMRHSRSEIWERLRGGFDEIGRWNSSCPLGLHADGMCSCESFPMAEESGTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESVVDSFPLKSHKKVDVGAGGNEAEQCYICLAEYEEGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGDVCGGFRESSAHSEVLPR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03567 538 SUPERFAMILY RING/U-box 471 522 - -
Rops2g03567 538 FunFam Putative RING zinc finger domain superfamily protein 444 524 - -
Rops2g03567 538 SMART ring_2 477 518 IPR001841 -
Rops2g03567 538 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 532 - -
Rops2g03567 538 MobiDBLite consensus disorder prediction 130 156 - -
Rops2g03567 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 523 IPR013083 -
Rops2g03567 538 Pfam Ring finger domain 476 519 IPR001841 -
Rops2g03567 538 MobiDBLite consensus disorder prediction 84 105 - -
Rops2g03567 538 MobiDBLite consensus disorder prediction 224 248 - -
Rops2g03567 538 MobiDBLite consensus disorder prediction 185 204 - -
Rops2g03567 538 MobiDBLite consensus disorder prediction 125 156 - -
Rops2g03567 538 ProSiteProfiles Zinc finger RING-type profile. 477 519 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03567 Rops-Chr2 66154793 66159520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03567 352 523 C3H Transcription Factor Family AT5G45290 48.958 5.42e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03567 - - gmx:100783722 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03567 2 66154793 66159520 Rops2g03567 2 66154793 66159520 ECH