Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03562 ATGGCTTTTCAGGATCATCTCCACCATGAAATAGCTTTCCAACGTTTCACTGATGAACAAGAGTTAACTGAGAATAGAGACATGCAACAGAGGCTACCACCGACATGGCTCAACAACAACGTTAACACCACTCAACAACAACGTCAGCAGAATTTCCTTCACTTGCAACCGGAGAAAACCATGGATCGGAACAGAAACGAGAGCAATTGTGAATCCGAGGATTTAAGGGAATACAAAGCTGACATTTTGGGACACCCCCTTTATGACCAGCTCTTATCTGCTCATGTTTCATGCCTAAGAATTGCAACCCCAGTTGACCAGCTTCCTAGGATCGATGCTCAGCTTCAACAGTCACAGCGTGTGGTGGAAAAGTACTCAGCAATTGGAAATAGAGTGGTGGATGAGAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTGTTGCTCTGTGCTTTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTTGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGAGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAACGACAACTTATATGAAGGAAGCATGGATGGTGCTGATAGTCTTGGCTTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGGTCTTTGATGGAGCGAGTGAGGCATGAGTTAAAGCATGAGCTCAAACAGGGTTACAAGGAGAAGATTGTGGATATAAGAGAAGAAATCCTAAGAAAGAGACGAGCGGGGAAGCTCCCTGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTACCCCATCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGA 1044 0.4521 MAFQDHLHHEIAFQRFTDEQELTENRDMQQRLPPTWLNNNVNTTQQQRQQNFLHLQPEKTMDRNRNESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAIGNRVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNDNLYEGSMDGADSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTTPSSSSNSKSKRKSAGETSNQSFM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03562 347 MobiDBLite consensus disorder prediction 317 347 - -
Rops2g03562 347 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Rops2g03562 347 SMART ELK_2 240 261 IPR005539 GO:0003677
Rops2g03562 347 SMART KNOX2_2 127 183 IPR005541 GO:0003677|GO:0005634
Rops2g03562 347 FunFam homeobox protein knotted-1-like 3 isoform X1 261 322 - -
Rops2g03562 347 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Rops2g03562 347 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 332 - -
Rops2g03562 347 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Rops2g03562 347 Pfam KNOX2 domain 132 182 IPR005541 GO:0003677|GO:0005634
Rops2g03562 347 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Rops2g03562 347 SUPERFAMILY Homeodomain-like 262 326 IPR009057 -
Rops2g03562 347 Pfam ELK domain 240 261 IPR005539 GO:0003677
Rops2g03562 347 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Rops2g03562 347 MobiDBLite consensus disorder prediction 182 210 - -
Rops2g03562 347 SMART HOX_1 262 327 IPR001356 GO:0003677
Rops2g03562 347 Gene3D - 259 338 - -
Rops2g03562 347 CDD homeodomain 263 323 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03562 Rops-Chr2 66088271 66094134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03562 78 336 Homeobox Transcription Factor Family AT5G25220 84.030 2.98e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops2g03562 KNOX2 4.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03562 - - gmx:100803673 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03562 2 66088271 66094134 Rops2g03562 2 66088271 66094134 ECH