Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g03550 | ATGCCCGACGGAGAATCCTCTTCCGCCGGTGCCGGCCAACTGCCCATGGAGCCCTCCGATCATGAACTGTCTCTGAGTCTTTCCCAAGTCAAAATTCACGAGGACTCAGTCAAGAAAGATCCCAAGAAAATTGCTAGAAGGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTTTATTTGGGAACCGGATGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGAGATGGGTCATTTGATTAGGAAGCCTGAGAAGAACGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACCGATTTTGAGGTTGGGATTTACTGTGGGAGCTCAAAGCGCTTGAAACATCATCAAGATTGGGAGCAAGAGATTGGACAGTATGAGGTTCTTGTGATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCAAGATGGATATGATTGCACTTCTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATAATGAAAGTCTTCTACAAAAATAATTCCACAAAGGTCCCCCGTATATTTGGCATGACTGCTTCCCCCGTTGTAGGAAAAGGTGCTTCTGGTGGAGCAAATCTACCAAAAAGCATCAATAGCCTTGAACTTATGCTTGATGCTAAGGTTTACTCAGTTGAAGACAAGGAACTGCAATCTTTTGTCACTACTCCTGTGATTAATATATATCATTACAGTTCTACTGCAAACGAGGAAACTAGCTTGTACTCGAAAATTGAGGAGGTTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGACGAACACTAAGAAACTTCTCAACCGGATGCATGATAATGTGATCTTCTGTCTAGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTTTGAGAGGTGATCATTCTGAGAGGCATGCATTAGTGGAGGCAGAAGGAAATTCAAGTGACGAGTCTGTGTGTGATAAATATCTTGATCAGGCAGCTAAACTCTTTACTTCACAATGCATGATAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCCCTTTTCTCGACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAATTTTAGGTTGCAAGAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCGAGATCCCTGTCATATATACTACAGCAGCTCAAGTTTCTAAGACAATGGACGAGTGGTTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAATCGAGAGGCCGTGCTCGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAATTAGACATAATTGATGGTTTTGAGAAAGATGAATTCCGAATGAACATGGAAATTACTGTCCGAACATCCAATGAGACATATATCATCCCCAAGGATCAAATATTCAGAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCGCATGATGAGTACTTCGACCCCAAGCCAAATTTTTTTTACTTTGATGATTTAGGGGGAATTGTCTGCCACATAACTTTGCCTTCCAATGCTCCAATACACCAAATTCTCAGTACACCACAGTTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAACTTAGGTGCTTTAAGTGATTGCCTCTTGCCAAAGCAAGATGATGCAGAGCCAGAGGAGAAGATTTTGGGCTCTTCTGATTGTGATGAGTGTGAAGATGACATTTCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTAGACTGTCATGGAAAAATGAGGAGAAAATTGTCCATCTCAACTCTTACTACTTAAAATTTTGTCCCCGTCCAGAGGATAGGGACTACAAAAAATTTGGTCTATTCATCATAACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTCCATCTTGCTCATGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTTCTCAAAATTATTATTGATAGATTAGAATTTGTTTCGGAGTTTGTAGACTTGGGTAAGGGTGCTGAATCTCACACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGAAAACATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGATAAAAAAGTTTTCCCTTTCTATAGTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTACAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGCAGAACTTTTATTTTGTCAAAAATATTGTCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAGGCACTTCAAGCTATGTGGACCACTTCATTGAAAAGTTTTCCATTCATCTCAAATGCCCTAAACAACCACTTCTGTATGCAAAACCACTCTCCAATTTGCACAACCTGCTACACGACCGAAAGCATGAGGATACAGAACCACATGAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGCTACCATCGATTATGCATCGTCTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCATATGCTATCTTCTTTCTTCCCAGAGGCTGCTAAAATTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGTGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGACGCTTTCCTTAAATTTTCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAGAAGGCGTTCCAATCTTACAAGTAATTCCAATTTGTTTAAGCTGGCTATTAGACGCAATTTGCAGGTCTATATACGTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGCCGTCCTTGCCCAAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTATGTTTAAATTCTGTCAAGGAGCAAGGAGCAGCAAATGAAATACGATGTGATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTACGTGGATTGGCATACAAGTTGATTTTGAAGCCTCACAAGTTGTTAATATTTGCACAGGAAGTGCTGGCTATTTTCCTCTTTCTGCTGATATAGACATTCCTTCCATCGAAAGTAAGTTAGGACATCACTTTGTTCATAAGGGTCTACTTCTCCAGGCATTTGTCCATCCTTCTTACAACAAGCATGGAGGAGGTTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTTTTGGATTATTTGATTACTTCATATCTATACTCAGCTTATCCCAAACTGAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAATTTTGATAAATTTATTTTATGTGATTCGAGTGGCCTGTCCGAGGCAATAAAAAAGTATGTGGACTATATTAGAAGACCTGTATCATGCCGTGGCATCAATGGAGGACCAAAATGTCCTAAGGCCCTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTAAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGGCCCAATTATGAAATTCTCATCAAGCTTGCAGCTTAGTCCTATTAGGGATTTGCAAGAACTTAGCCAATCTCATAATTTGGAATTGGAGTTTCTTCCACAAAAAATGACTAAATCATTTTCAGTTGAAGCCAAAGTGACTGGGAAGGGTGTATGCCAATCAGCTTCAGCAACCAGCCATAATAAAAAAGAGGCTTCTAGACTTGCTTCACAGCTACTATTTTCAAACTTAAAGGCTCAAGGGTGGAAACCAAAGTCAAGAACTTTGGAAGAGGTTCTGAGGTCAACCTTGAAGGGGGTACCAAAACTTATTGGCTATGATGAAACTCCGATTGATGTAACAGATACCAATACCATCAGACCCATAATGGTTAATGGAGACATATGTAGTAAGTCTAACCCGGAAATTCACCCTATCCAAGAGGTTGTAGTTGATACATGCTCCCCATGCGTGAAACCTGTTGGCCAAAAGCTTCAATCTTCTCCTAAAGGAACGCATAGTGGAACCTTTAAAAATCGTGATTGTGGCAGTGACTCGTCAAGGACAGCAAGATCACGATTATATGAATTGTGTGCTGCTTATTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGAAGGACCAGGCCACCTTAAATTGTTCACTTGCAAGGTGATCTTGGAGATAGAAGAGGCCCCAGATATGGTTCTAGAGATTGTTGGGGAACCTCTATCAAGGAAGAAAGACGCAGCAGAGAGTGCAGCTGAGGGTGCAATTTGGTACCTGCAACAGCAAGGTTACCTGCCTAATGATAATGGTAATTGA | 4896 | 0.4048 | MPDGESSSAGAGQLPMEPSDHELSLSLSQVKIHEDSVKKDPKKIARRYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPEKNVCVFLAPTVALVHQQAKVIEDSTDFEVGIYCGSSKRLKHHQDWEQEIGQYEVLVMTPQILLHNLSHCFIKMDMIALLIFDECHHAQVKSNHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGASGGANLPKSINSLELMLDAKVYSVEDKELQSFVTTPVINIYHYSSTANEETSLYSKIEEVKRQCIATLGRSIEDHQKRTNTKKLLNRMHDNVIFCLGNLGIWGALQASHILLRGDHSERHALVEAEGNSSDESVCDKYLDQAAKLFTSQCMIGDSVSDPSSVEILKEPLFSTKLLRLIGILSNFRLQENMKCIIFVNRIVTARSLSYILQQLKFLRQWTSGFLVGVHSGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEFRMNMEITVRTSNETYIIPKDQIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFFYFDDLGGIVCHITLPSNAPIHQILSTPQLSMEASKRDACLKAIEELYNLGALSDCLLPKQDDAEPEEKILGSSDCDECEDDISRGELHEMLVPSAFRLSWKNEEKIVHLNSYYLKFCPRPEDRDYKKFGLFIITRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEIKMAENFQEMFLKIIIDRLEFVSEFVDLGKGAESHTSTSTFYLLLPVILQEYENIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPFYSHLQLANGYRSVTDVENSLVYAPHKQNFYFVKNIVYEKNGFSPYKDSGTSSYVDHFIEKFSIHLKCPKQPLLYAKPLSNLHNLLHDRKHEDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSFFPEAAKISALRVLEALTTEKCQECFSLERLEVLGDAFLKFSVARHFFLMHDSLHEGDLTRRRSNLTSNSNLFKLAIRRNLQVYIRDQAFDPFQFYALGRPCPRVCSKETEESIHLCLNSVKEQGAANEIRCDKNHHWLHRKTIADVVEALVGAFIVDSGFKAAIAFLTWIGIQVDFEASQVVNICTGSAGYFPLSADIDIPSIESKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRNFDKFILCDSSGLSEAIKKYVDYIRRPVSCRGINGGPKCPKALGDLVESCVGAILLDSGLNLNKVWKIMTSFLGPIMKFSSSLQLSPIRDLQELSQSHNLELEFLPQKMTKSFSVEAKVTGKGVCQSASATSHNKKEASRLASQLLFSNLKAQGWKPKSRTLEEVLRSTLKGVPKLIGYDETPIDVTDTNTIRPIMVNGDICSKSNPEIHPIQEVVVDTCSPCVKPVGQKLQSSPKGTHSGTFKNRDCGSDSSRTARSRLYELCAAYCWKPPTFECCKEEGPGHLKLFTCKVILEIEEAPDMVLEIVGEPLSRKKDAAESAAEGAIWYLQQQGYLPNDNGN* | 1632 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g03550 | 1631 | PANTHER | DICER-RELATED | 58 | 1445 | - | - | |
Rops2g03550 | 1631 | SMART | riboneu5 | 1220 | 1372 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | SMART | riboneu5 | 1017 | 1184 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Pfam | Helicase conserved C-terminal domain | 396 | 507 | IPR001650 | - | |
Rops2g03550 | 1631 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 93 | 523 | IPR027417 | - | |
Rops2g03550 | 1631 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1545 | 1621 | IPR014720 | - | |
Rops2g03550 | 1631 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 544 | IPR001650 | - | |
Rops2g03550 | 1631 | Pfam | double strand RNA binding domain from DEAD END PROTEIN 1 | 1545 | 1620 | - | - | |
Rops2g03550 | 1631 | Gene3D | - | 45 | 300 | IPR027417 | - | |
Rops2g03550 | 1631 | Pfam | Dicer dimerisation domain | 573 | 658 | - | - | |
Rops2g03550 | 1631 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1376 | 1442 | IPR014720 | - | |
Rops2g03550 | 1631 | ProSiteProfiles | Ribonuclease III family domain profile. | 1019 | 1164 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | SUPERFAMILY | dsRNA-binding domain-like | 1331 | 1441 | - | - | |
Rops2g03550 | 1631 | SMART | DRBM_3 | 1377 | 1441 | IPR014720 | - | |
Rops2g03550 | 1631 | SMART | DRBM_3 | 1546 | 1620 | IPR014720 | - | |
Rops2g03550 | 1631 | SUPERFAMILY | RNase III domain-like | 1203 | 1368 | IPR036389 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Gene3D | - | 382 | 543 | IPR027417 | - | |
Rops2g03550 | 1631 | FunFam | Endoribonuclease dicer-like 1 | 1200 | 1370 | - | - | |
Rops2g03550 | 1631 | FunFam | Endoribonuclease dicer-like 1 | 568 | 664 | - | - | |
Rops2g03550 | 1631 | Gene3D | Ribonuclease III domain | 1203 | 1376 | IPR036389 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Gene3D | Dicer dimerisation domain | 569 | 664 | IPR038248 | - | |
Rops2g03550 | 1631 | Pfam | Ribonuclease III domain | 1033 | 1164 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Pfam | Ribonuclease III domain | 1240 | 1349 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | SMART | helicmild6 | 419 | 509 | IPR001650 | - | |
Rops2g03550 | 1631 | Pfam | DEAD/DEAH box helicase | 47 | 193 | IPR011545 | GO:0003676|GO:0005524 | |
Rops2g03550 | 1631 | Gene3D | paz domain | 862 | 966 | - | - | |
Rops2g03550 | 1631 | CDD | DEXHc_dicer | 43 | 242 | - | - | |
Rops2g03550 | 1631 | MobiDBLite | consensus disorder prediction | 1521 | 1543 | - | - | |
Rops2g03550 | 1631 | SMART | PAZ_2_a_3 | 845 | 994 | IPR003100 | GO:0005515 | |
Rops2g03550 | 1631 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 228 | IPR014001 | - | |
Rops2g03550 | 1631 | FunFam | Endoribonuclease dicer-like protein | 40 | 279 | - | - | |
Rops2g03550 | 1631 | CDD | RIBOc | 1018 | 1174 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | ProSitePatterns | Ribonuclease III family signature. | 1240 | 1248 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Gene3D | Ribonuclease III domain | 1013 | 1175 | IPR036389 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 573 | 663 | IPR005034 | GO:0016891 | |
Rops2g03550 | 1631 | SMART | ultradead3 | 41 | 243 | IPR014001 | - | |
Rops2g03550 | 1631 | CDD | RIBOc | 1221 | 1371 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | CDD | DSRM_DCL_plant | 1552 | 1621 | - | - | |
Rops2g03550 | 1631 | ProSiteProfiles | Ribonuclease III family domain profile. | 1205 | 1349 | IPR000999 | GO:0004525|GO:0006396 | |
Rops2g03550 | 1631 | Pfam | PAZ domain | 869 | 989 | IPR003100 | GO:0005515 | |
Rops2g03550 | 1631 | SUPERFAMILY | PAZ domain | 867 | 966 | IPR036085 | GO:0005515 | |
Rops2g03550 | 1631 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Rops2g03550 | 1631 | SUPERFAMILY | dsRNA-binding domain-like | 1543 | 1626 | - | - | |
Rops2g03550 | 1631 | Gene3D | - | 1552 | 1621 | - | - | |
Rops2g03550 | 1631 | ProSiteProfiles | PAZ domain profile. | 869 | 968 | IPR003100 | GO:0005515 | |
Rops2g03550 | 1631 | FunFam | Endoribonuclease dicer-like 1 | 380 | 543 | - | - | |
Rops2g03550 | 1631 | SUPERFAMILY | RNase III domain-like | 1017 | 1178 | IPR036389 | GO:0004525|GO:0006396 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g03550 | Rops-Chr2 | 65867260 | 65895367 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g03550 | 407 | 506 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.000 | 7.65e-07 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g03550 | K11592 | - | gmx:100797277 | 2747.61 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g03550 | 2 | 65867260 | 65895367 | Rops2g03550 | 2 | 65867260 | 65895367 | ECH |