Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03550 ATGCCCGACGGAGAATCCTCTTCCGCCGGTGCCGGCCAACTGCCCATGGAGCCCTCCGATCATGAACTGTCTCTGAGTCTTTCCCAAGTCAAAATTCACGAGGACTCAGTCAAGAAAGATCCCAAGAAAATTGCTAGAAGGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTTTATTTGGGAACCGGATGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGAGATGGGTCATTTGATTAGGAAGCCTGAGAAGAACGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACCGATTTTGAGGTTGGGATTTACTGTGGGAGCTCAAAGCGCTTGAAACATCATCAAGATTGGGAGCAAGAGATTGGACAGTATGAGGTTCTTGTGATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCAAGATGGATATGATTGCACTTCTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATAATGAAAGTCTTCTACAAAAATAATTCCACAAAGGTCCCCCGTATATTTGGCATGACTGCTTCCCCCGTTGTAGGAAAAGGTGCTTCTGGTGGAGCAAATCTACCAAAAAGCATCAATAGCCTTGAACTTATGCTTGATGCTAAGGTTTACTCAGTTGAAGACAAGGAACTGCAATCTTTTGTCACTACTCCTGTGATTAATATATATCATTACAGTTCTACTGCAAACGAGGAAACTAGCTTGTACTCGAAAATTGAGGAGGTTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGACGAACACTAAGAAACTTCTCAACCGGATGCATGATAATGTGATCTTCTGTCTAGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTTTGAGAGGTGATCATTCTGAGAGGCATGCATTAGTGGAGGCAGAAGGAAATTCAAGTGACGAGTCTGTGTGTGATAAATATCTTGATCAGGCAGCTAAACTCTTTACTTCACAATGCATGATAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCCCTTTTCTCGACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAATTTTAGGTTGCAAGAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCGAGATCCCTGTCATATATACTACAGCAGCTCAAGTTTCTAAGACAATGGACGAGTGGTTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAATCGAGAGGCCGTGCTCGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAATTAGACATAATTGATGGTTTTGAGAAAGATGAATTCCGAATGAACATGGAAATTACTGTCCGAACATCCAATGAGACATATATCATCCCCAAGGATCAAATATTCAGAGTTGATTCATCTGGTGCTTCTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCGCATGATGAGTACTTCGACCCCAAGCCAAATTTTTTTTACTTTGATGATTTAGGGGGAATTGTCTGCCACATAACTTTGCCTTCCAATGCTCCAATACACCAAATTCTCAGTACACCACAGTTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAACTTAGGTGCTTTAAGTGATTGCCTCTTGCCAAAGCAAGATGATGCAGAGCCAGAGGAGAAGATTTTGGGCTCTTCTGATTGTGATGAGTGTGAAGATGACATTTCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTAGACTGTCATGGAAAAATGAGGAGAAAATTGTCCATCTCAACTCTTACTACTTAAAATTTTGTCCCCGTCCAGAGGATAGGGACTACAAAAAATTTGGTCTATTCATCATAACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTCCATCTTGCTCATGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTTCTCAAAATTATTATTGATAGATTAGAATTTGTTTCGGAGTTTGTAGACTTGGGTAAGGGTGCTGAATCTCACACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGAAAACATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGATAAAAAAGTTTTCCCTTTCTATAGTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTACAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGCAGAACTTTTATTTTGTCAAAAATATTGTCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAGGCACTTCAAGCTATGTGGACCACTTCATTGAAAAGTTTTCCATTCATCTCAAATGCCCTAAACAACCACTTCTGTATGCAAAACCACTCTCCAATTTGCACAACCTGCTACACGACCGAAAGCATGAGGATACAGAACCACATGAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGCTACCATCGATTATGCATCGTCTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCATATGCTATCTTCTTTCTTCCCAGAGGCTGCTAAAATTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGTGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGACGCTTTCCTTAAATTTTCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAGAAGGCGTTCCAATCTTACAAGTAATTCCAATTTGTTTAAGCTGGCTATTAGACGCAATTTGCAGGTCTATATACGTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGCCGTCCTTGCCCAAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTATGTTTAAATTCTGTCAAGGAGCAAGGAGCAGCAAATGAAATACGATGTGATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTACGTGGATTGGCATACAAGTTGATTTTGAAGCCTCACAAGTTGTTAATATTTGCACAGGAAGTGCTGGCTATTTTCCTCTTTCTGCTGATATAGACATTCCTTCCATCGAAAGTAAGTTAGGACATCACTTTGTTCATAAGGGTCTACTTCTCCAGGCATTTGTCCATCCTTCTTACAACAAGCATGGAGGAGGTTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTTTTGGATTATTTGATTACTTCATATCTATACTCAGCTTATCCCAAACTGAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAATTTTGATAAATTTATTTTATGTGATTCGAGTGGCCTGTCCGAGGCAATAAAAAAGTATGTGGACTATATTAGAAGACCTGTATCATGCCGTGGCATCAATGGAGGACCAAAATGTCCTAAGGCCCTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTAAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGGCCCAATTATGAAATTCTCATCAAGCTTGCAGCTTAGTCCTATTAGGGATTTGCAAGAACTTAGCCAATCTCATAATTTGGAATTGGAGTTTCTTCCACAAAAAATGACTAAATCATTTTCAGTTGAAGCCAAAGTGACTGGGAAGGGTGTATGCCAATCAGCTTCAGCAACCAGCCATAATAAAAAAGAGGCTTCTAGACTTGCTTCACAGCTACTATTTTCAAACTTAAAGGCTCAAGGGTGGAAACCAAAGTCAAGAACTTTGGAAGAGGTTCTGAGGTCAACCTTGAAGGGGGTACCAAAACTTATTGGCTATGATGAAACTCCGATTGATGTAACAGATACCAATACCATCAGACCCATAATGGTTAATGGAGACATATGTAGTAAGTCTAACCCGGAAATTCACCCTATCCAAGAGGTTGTAGTTGATACATGCTCCCCATGCGTGAAACCTGTTGGCCAAAAGCTTCAATCTTCTCCTAAAGGAACGCATAGTGGAACCTTTAAAAATCGTGATTGTGGCAGTGACTCGTCAAGGACAGCAAGATCACGATTATATGAATTGTGTGCTGCTTATTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGAAGGACCAGGCCACCTTAAATTGTTCACTTGCAAGGTGATCTTGGAGATAGAAGAGGCCCCAGATATGGTTCTAGAGATTGTTGGGGAACCTCTATCAAGGAAGAAAGACGCAGCAGAGAGTGCAGCTGAGGGTGCAATTTGGTACCTGCAACAGCAAGGTTACCTGCCTAATGATAATGGTAATTGA 4896 0.4048 MPDGESSSAGAGQLPMEPSDHELSLSLSQVKIHEDSVKKDPKKIARRYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPEKNVCVFLAPTVALVHQQAKVIEDSTDFEVGIYCGSSKRLKHHQDWEQEIGQYEVLVMTPQILLHNLSHCFIKMDMIALLIFDECHHAQVKSNHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGASGGANLPKSINSLELMLDAKVYSVEDKELQSFVTTPVINIYHYSSTANEETSLYSKIEEVKRQCIATLGRSIEDHQKRTNTKKLLNRMHDNVIFCLGNLGIWGALQASHILLRGDHSERHALVEAEGNSSDESVCDKYLDQAAKLFTSQCMIGDSVSDPSSVEILKEPLFSTKLLRLIGILSNFRLQENMKCIIFVNRIVTARSLSYILQQLKFLRQWTSGFLVGVHSGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEFRMNMEITVRTSNETYIIPKDQIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFFYFDDLGGIVCHITLPSNAPIHQILSTPQLSMEASKRDACLKAIEELYNLGALSDCLLPKQDDAEPEEKILGSSDCDECEDDISRGELHEMLVPSAFRLSWKNEEKIVHLNSYYLKFCPRPEDRDYKKFGLFIITRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEIKMAENFQEMFLKIIIDRLEFVSEFVDLGKGAESHTSTSTFYLLLPVILQEYENIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPFYSHLQLANGYRSVTDVENSLVYAPHKQNFYFVKNIVYEKNGFSPYKDSGTSSYVDHFIEKFSIHLKCPKQPLLYAKPLSNLHNLLHDRKHEDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSFFPEAAKISALRVLEALTTEKCQECFSLERLEVLGDAFLKFSVARHFFLMHDSLHEGDLTRRRSNLTSNSNLFKLAIRRNLQVYIRDQAFDPFQFYALGRPCPRVCSKETEESIHLCLNSVKEQGAANEIRCDKNHHWLHRKTIADVVEALVGAFIVDSGFKAAIAFLTWIGIQVDFEASQVVNICTGSAGYFPLSADIDIPSIESKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRNFDKFILCDSSGLSEAIKKYVDYIRRPVSCRGINGGPKCPKALGDLVESCVGAILLDSGLNLNKVWKIMTSFLGPIMKFSSSLQLSPIRDLQELSQSHNLELEFLPQKMTKSFSVEAKVTGKGVCQSASATSHNKKEASRLASQLLFSNLKAQGWKPKSRTLEEVLRSTLKGVPKLIGYDETPIDVTDTNTIRPIMVNGDICSKSNPEIHPIQEVVVDTCSPCVKPVGQKLQSSPKGTHSGTFKNRDCGSDSSRTARSRLYELCAAYCWKPPTFECCKEEGPGHLKLFTCKVILEIEEAPDMVLEIVGEPLSRKKDAAESAAEGAIWYLQQQGYLPNDNGN* 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03550 1631 PANTHER DICER-RELATED 58 1445 - -
Rops2g03550 1631 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 SMART riboneu5 1017 1184 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 Pfam Helicase conserved C-terminal domain 396 507 IPR001650 -
Rops2g03550 1631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 523 IPR027417 -
Rops2g03550 1631 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1545 1621 IPR014720 -
Rops2g03550 1631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 544 IPR001650 -
Rops2g03550 1631 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1545 1620 - -
Rops2g03550 1631 Gene3D - 45 300 IPR027417 -
Rops2g03550 1631 Pfam Dicer dimerisation domain 573 658 - -
Rops2g03550 1631 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1376 1442 IPR014720 -
Rops2g03550 1631 ProSiteProfiles Ribonuclease III family domain profile. 1019 1164 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 SUPERFAMILY dsRNA-binding domain-like 1331 1441 - -
Rops2g03550 1631 SMART DRBM_3 1377 1441 IPR014720 -
Rops2g03550 1631 SMART DRBM_3 1546 1620 IPR014720 -
Rops2g03550 1631 SUPERFAMILY RNase III domain-like 1203 1368 IPR036389 GO:0004525|GO:0006396
Rops2g03550 1631 Gene3D - 382 543 IPR027417 -
Rops2g03550 1631 FunFam Endoribonuclease dicer-like 1 1200 1370 - -
Rops2g03550 1631 FunFam Endoribonuclease dicer-like 1 568 664 - -
Rops2g03550 1631 Gene3D Ribonuclease III domain 1203 1376 IPR036389 GO:0004525|GO:0006396
Rops2g03550 1631 Gene3D Dicer dimerisation domain 569 664 IPR038248 -
Rops2g03550 1631 Pfam Ribonuclease III domain 1033 1164 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 SMART helicmild6 419 509 IPR001650 -
Rops2g03550 1631 Pfam DEAD/DEAH box helicase 47 193 IPR011545 GO:0003676|GO:0005524
Rops2g03550 1631 Gene3D paz domain 862 966 - -
Rops2g03550 1631 CDD DEXHc_dicer 43 242 - -
Rops2g03550 1631 MobiDBLite consensus disorder prediction 1521 1543 - -
Rops2g03550 1631 SMART PAZ_2_a_3 845 994 IPR003100 GO:0005515
Rops2g03550 1631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 228 IPR014001 -
Rops2g03550 1631 FunFam Endoribonuclease dicer-like protein 40 279 - -
Rops2g03550 1631 CDD RIBOc 1018 1174 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 Gene3D Ribonuclease III domain 1013 1175 IPR036389 GO:0004525|GO:0006396
Rops2g03550 1631 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 573 663 IPR005034 GO:0016891
Rops2g03550 1631 SMART ultradead3 41 243 IPR014001 -
Rops2g03550 1631 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 CDD DSRM_DCL_plant 1552 1621 - -
Rops2g03550 1631 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Rops2g03550 1631 Pfam PAZ domain 869 989 IPR003100 GO:0005515
Rops2g03550 1631 SUPERFAMILY PAZ domain 867 966 IPR036085 GO:0005515
Rops2g03550 1631 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g03550 1631 SUPERFAMILY dsRNA-binding domain-like 1543 1626 - -
Rops2g03550 1631 Gene3D - 1552 1621 - -
Rops2g03550 1631 ProSiteProfiles PAZ domain profile. 869 968 IPR003100 GO:0005515
Rops2g03550 1631 FunFam Endoribonuclease dicer-like 1 380 543 - -
Rops2g03550 1631 SUPERFAMILY RNase III domain-like 1017 1178 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03550 Rops-Chr2 65867260 65895367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03550 407 506 Eukaryotic Initiation Factors Gene Family AT3G19760 31.000 7.65e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03550 K11592 - gmx:100797277 2747.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03550 2 65867260 65895367 Rops2g03550 2 65867260 65895367 ECH