Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03549 ATGTCAGGGTGGGACGAGGGAGGTGTATACTACAGTGACCAAGCTCACTCCTGGGACGACGGTCGTACCGAAACCGAAGCCGATGCAACGAATCACTCCCTCCTTCAGAAATTCAAGGAATTCATCAGAACCTTCAGCACCGCCAACAATGTCTTTCCTTACAGAGAGAGCCTTCTTCACAACCCTAAGTTCCTTCTCGTCGACATGGAAGATCTTGACGCCTTTGAACCTGACCTCACCGCCAAACTCCGATCTTCCCCTGCCGATTTCTTGCCACTGTTCGAGACCGCCGCGGCGCAGGTTCTGGCGAGTTTGAAGACCAAGGTGGTTGGGGATACTGGAGTCAAGGAGGATCCGGTCACTGGTGATGTCCAGATTCTCCTCACCTCTAAGGAGGATCCAGTGTCCATGAGATTGCTCGGGGCTCAATCCATATCCAAGCTTGTTAAAATTGCTGGGATTACTATTGCAGCTTCAAGGACTAAGGCAAAGGCAACTTATGTTACCCTGATATGTAAGAACTGCAAGAAGGGGAAACAAGTTCCTTGTCGGCCAGGACTTGGGGGAGCAATTGTTCCTCGTTCCTGTGATCATATTCCTCAGCCTGGAGAAGAACCATGCCCAATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTCGATCAACAAACCTTGAAACTGCAAGAAAACCCTGAGGATGTCCCGACTGGAGAGCTTCCTAGAAATATGCTTCTCTCTGTTGATCGGCATCTTGTTCAAACGGTAGTACCTGGGTCAAGACTAACAATCATTGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTACCTCCCAAAGAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAGCAAATGAAGCTAAGTCTCGAGGTCCAGCTGCATTTACTCCAGAAGAGATAGAAGAATTCAAAAAATTTGCAGCTGAACCTAATGCATATAAAAATATATGCTCCAAGATTGCTCCGTCCATATTTGGGCATGATGATGTCAAAAAGGCTGTGGCCTGTCTTCTGTTTGGAGGGTCAAGAAAGTATTTGCCAGATGGAGTGAAATTAAGAGGTGATATCAATGTGTTGCTTCTGGGGGATCCATCTACAGCGAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCTGCTGCTGGTCTCACAGCTTCTGTAATCCGAGATAGCAGCACTCGCGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTACAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATTGTGAAAGACATCAGAATGTACAGTCAAGATAAGATAATAGCTAGTCATATCATAAAGGTTCATGCATCAGCTGATGCAAGAATGGGTGAGAACAGGATTTCCAGAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAACTGAATGCCACCCTCGTCTATCCGAATCTGCAGCAAAATTACTGCAGAACAATTATGTGAAAATCAGACAGGACATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTGAGGCAGCTGGAAGCTATTGTGAGGTTGAGTGAGGCACTTGCAAAGATGAAACTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCAATAAGGCTTTTCACTGTGTCTACGATGGATGCTGCTAGGTCGGGAATAAACCAACAAATGAATCTTACACCCGAAATGATGAAGGAGGTCCAGCATGTAGAAAGTCTGATAAAGAGAAGAATCGGGATTGGGAACCACATATCAGAAAGAAGGCTGATCGATGACCTGGGCAGAATGGGAATTAATGAAACTCTTGTGAGAAAAGCTCTGATATACATGCACCAGAGAGAGGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATATAGGAAATTTTAA 2193 0.446 MSGWDEGGVYYSDQAHSWDDGRTETEADATNHSLLQKFKEFIRTFSTANNVFPYRESLLHNPKFLLVDMEDLDAFEPDLTAKLRSSPADFLPLFETAAAQVLASLKTKVVGDTGVKEDPVTGDVQILLTSKEDPVSMRLLGAQSISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTVVPGSRLTIIGIYSIYQASNSSTSQRGAVAVRQPYIRVVGIEEANEAKSRGPAAFTPEEIEEFKKFAAEPNAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKYLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADARMGENRISREENWLKRYLQYCRTECHPRLSESAAKLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAARSGINQQMNLTPEMMKEVQHVESLIKRRIGIGNHISERRLIDDLGRMGINETLVRKALIYMHQREEVEYKRERRVVYRKF* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03549 730 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 FunFam DNA helicase 164 222 - -
Rops2g03549 730 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Rops2g03549 730 CDD MCM5 331 645 - -
Rops2g03549 730 FunFam DNA helicase 29 117 - -
Rops2g03549 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 646 IPR027417 -
Rops2g03549 730 SMART mcm 133 647 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 Coils Coil 577 597 - -
Rops2g03549 730 Gene3D - 30 116 - -
Rops2g03549 730 SUPERFAMILY Nucleic acid-binding proteins 37 294 IPR012340 -
Rops2g03549 730 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 26 679 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 Pfam MCM OB domain 137 272 IPR033762 -
Rops2g03549 730 Gene3D - 164 222 - -
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 640 657 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 564 579 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 164 176 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 138 153 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Rops2g03549 730 Gene3D - 309 667 IPR027417 -
Rops2g03549 730 Pfam MCM AAA-lid domain 556 645 IPR041562 -
Rops2g03549 730 FunFam DNA helicase 309 660 - -
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops2g03549 730 Gene3D - 137 272 IPR012340 -
Rops2g03549 730 Pfam MCM N-terminal domain 36 107 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03549 Rops-Chr2 65851236 65856669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03549 1 729 Core DNA Replication Machinery Family AT2G07690 76.543 0.0 1163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03549 K02209 - jre:109019482 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03549 2 65851236 65856669 Rops2g03549 2 65851236 65856669 ECH