LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03535	ATGTTGTCCAGAATCGCCCTTGTCCTCTCCTTTCACGTTTTCATCTATATTCTGAAGTTCCAATCCGCAGAAGCTGAATCATGGTTCAGAATTGGTTACTGGTATAGCAGCAGTGGATTTCCAGTATCTGATATCAACTCTGCCCTCTATACTCACCTGATATGCGCTTTTGCTGATGTTAACACTTCATCCTTTGAGCTCTCTGTCTCCTCATCAAATGAGCAACGATTCTCTATTTTCACAAACACTGTCAGACTCAAGAACCCATCCATCACTACCCTTCTTTCCACTGGTGGAGACGAAAATAGTGATGCCATCCAATCCATGATGAACAATGCTTCTTCAAGGAAACCCTTCATTCAATCTTCAATAAGAATGGTCAGACTTTATGGATTTCAAGGCTTGGACTTGTACTGGCCTACCATTAAGACTACCTCTGATGCGGACAACCTGGGAAAGCTTTTCCAAGAGTGGAGAGCTGCTGCAAAGTCTGAGGTAAAAACAAACTCTACACTTCAAGAATTGATCTTGACTGCAGTTGTTGAAGCTTCACCTGATTTGGATAATGGGTCCTACCCAGTGGAGTCAATCAGAAGTAACTTGAATTGGATACATGTTTATACATATGATTACCATTCAGCCATGGGACAAAACTTCACTGCTGCACCTTCAGCTTTATATGACCCTGCAGGTGAAGGTGATCTCAACACAGACTACAGTATCAAGGCATGGATTAGGAACGGGTTACCAGCAAACAAGTTGGTTTTGGGTTTGCCTTTCTATGGAAATGCATGGAAACTCCAAAATCCCAAAAACAAAGCAATAGGTGCACCAGCAGCAGGTCCAGCTGATGGATCCGATGGCTCCATAAGTTATAAGAAGATAAAAGTTGACATTCAGCAAAATGGGGCTGCAGTATTGTATAATGACACTTATGTCACAAATTACTGCTCATTTGGATTAACTTGGATTGGCTTTGATGATGTTGAGGTTGTCCAGAAGAAGGTGTCCTATGTGAGGGAAAAGCAGCTACTCGGTTATTATGTGTGGCATGTTTCCTTTGATGACGACAAGTGGACACTTAGTAGCGCAGCAGCTGAACAGGTTGGTGATCACAAAGAGGTTCGTGATCACAAAGAGGACCGGAGGAAAATATTAGTGATCACTTTGAGTGTTACTGCATTAGTCATTCTTATGTTGGGTGTCACTATCTATTACCAAAGGAAGAGAATATTCAAATCAATCGGTGAATCTGAAGTGAATAAAAAAGTTGCCGGACCTTTCCATGGAGACCCGCCAGATTTACAAGTCTATAGATTTATTGACATTGAAGCGGCTACAGATAAATTTTCCTATGAAAATAAGCTTGGACAGGGTGGTTATGGTCCTGTTTACAAGGGGATCCTAACTAATGGTCAGGAAATAGCCGTAAAAAAATTATCAATATCTTCTACACAAGGATTTGAGGAATTCAAAAATGAGGTAACACTTACCGCAAGACTACAACATGTGAATCTTGTCCGGCTATTGGGTTTCTGCGTTGAAAGAGGGGAGCAGATGCTGGTGTATGAATACATGGCAAATAAAAGCTTGGATTTCTACCTCTTTGATCCTATTAGACGACATATGATAGATTGGAACAAGCGTGTTGGCATTATTGAAGGAGTTATGCAGGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATAATTCATAGAGATTTGAAAGCTAGCAATATTTTATTAGATCATGAGATGAGGCCAAAGATATCAGACTTTGGGATGGCAAGAATATTCACAAAAGATGAACAAGAAGCAAACACTAGCAAGATTGTGGGAACATATGGTTATATTCCACCTGAATACGTTAAACGAGGTGTGTATTCCACTAAATCCGATGTCTATAGTTTTGGGGTCCTACTTCTACAAATTATAAGTGGCAAAAAGACAAGTGGCTTTTATGGAGACGACGAAGATTTAAAGCTTTTGGACTATGCTTATGAGTTATGGAAAGAAGGGAGGGGTATGGAGTTCGTGGATCTTTCACTTGATGACACATCTTCAACGTGCAAACTAATGAAATGCATGCAAATTGCTTTGTTATGCGTCCAAGAACATGCAAATGATAGGCCTTCCATGCTAGAAGTTTCTTCAATGTTGAGAAACGAAAATAACTCTCTAGCCAACCCCAAAAAGCCTGCATTTTCAAAAGAGAAAGATGAGGATGAAATAAATGAGTGTCCACCCCTAGAAATTGTTTCAGTCAATGATACAACAATAACTGAAATGGTGGCCAGATAA	2304	0.401	MLSRIALVLSFHVFIYILKFQSAEAESWFRIGYWYSSSGFPVSDINSALYTHLICAFADVNTSSFELSVSSSNEQRFSIFTNTVRLKNPSITTLLSTGGDENSDAIQSMMNNASSRKPFIQSSIRMVRLYGFQGLDLYWPTIKTTSDADNLGKLFQEWRAAAKSEVKTNSTLQELILTAVVEASPDLDNGSYPVESIRSNLNWIHVYTYDYHSAMGQNFTAAPSALYDPAGEGDLNTDYSIKAWIRNGLPANKLVLGLPFYGNAWKLQNPKNKAIGAPAAGPADGSDGSISYKKIKVDIQQNGAAVLYNDTYVTNYCSFGLTWIGFDDVEVVQKKVSYVREKQLLGYYVWHVSFDDDKWTLSSAAAEQVGDHKEVRDHKEDRRKILVITLSVTALVILMLGVTIYYQRKRIFKSIGESEVNKKVAGPFHGDPPDLQVYRFIDIEAATDKFSYENKLGQGGYGPVYKGILTNGQEIAVKKLSISSTQGFEEFKNEVTLTARLQHVNLVRLLGFCVERGEQMLVYEYMANKSLDFYLFDPIRRHMIDWNKRVGIIEGVMQGLLYLQEYSRFTIIHRDLKASNILLDHEMRPKISDFGMARIFTKDEQEANTSKIVGTYGYIPPEYVKRGVYSTKSDVYSFGVLLLQIISGKKTSGFYGDDEDLKLLDYAYELWKEGRGMEFVDLSLDDTSSTCKLMKCMQIALLCVQEHANDRPSMLEVSSMLRNENNSLANPKKPAFSKEKDEDEINECPPLEIVSVNDTTITEMVAR*	768

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g03535	767	Gene3D	Glycosidases	42	356	-	-
	Rops2g03535	767	FunFam	Uncharacterized protein	526	730	-	-
	Rops2g03535	767	Pfam	Protein tyrosine and serine/threonine kinase	452	720	IPR001245	GO:0004672\|GO:0006468
	Rops2g03535	767	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	86	763	-	-
	Rops2g03535	767	Gene3D	-	260	326	IPR029070	-
	Rops2g03535	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	571	583	IPR008271	GO:0004672\|GO:0006468
	Rops2g03535	767	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	417	525	-	-
	Rops2g03535	767	SMART	serkin_6	450	721	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03535	767	SUPERFAMILY	(Trans)glycosidases	29	370	IPR017853	-
	Rops2g03535	767	SUPERFAMILY	Chitinase insertion domain	261	326	IPR029070	-
	Rops2g03535	767	Gene3D	Transferase(Phosphotransferase) domain 1	526	745	-	-
	Rops2g03535	767	SUPERFAMILY	Protein kinase-like (PK-like)	433	743	IPR011009	-
	Rops2g03535	767	CDD	STKc_IRAK	456	721	-	-
	Rops2g03535	767	Gene3D	Phosphorylase Kinase; domain 1	418	525	-	-
	Rops2g03535	767	SMART	2g34	29	355	IPR011583	GO:0008061
	Rops2g03535	767	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	28	372	IPR001223	GO:0005975
	Rops2g03535	767	ProSiteProfiles	Protein kinase domain profile.	450	736	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03535	767	Pfam	Glycosyl hydrolases family 18	31	355	IPR001223	GO:0005975
	Rops2g03535	767	FunFam	Chitotriosidase-1	260	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03535	Rops-Chr2	65590054	65596439	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03535	432	736	Receptor kinase-like Gene Family	AT4G11480	54.902	9.72e-114	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops2g03535		Glyco_hydro_18	9e-69	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03535	-		-	vun:114175226	1056.59