LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03534	ATGGCAGGCACGGCAGCCACTTTTACAAGAATATTATATAAACTAAGACGTTCATCAGAAGCTGATAAAGATCTCGACGGAAATGCTTCTGATCTGATAGTATTCAGTTATCTCACCATTAAAGTGGCTACAGAGAACTTCTCAAAAGATAATAAGCTTGGAGAGGGGGGATTTGGCACAGTATACAAGGGAAAGTTACGGAAGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACCTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCTCGCTTACAGCTAGACTTCAACATGTGAATTTAGTTAGACTTCTGGGCTACTGCACAAAAAGGGATGAGAAGATTCTGATCTATGAATACCTACCAAACAAAAGCTTTGATCATTTCCTCTTTGGAGTTACTCAAGGCCTTCTTTATCTCCAGGAGTACTCGAATTACACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTCTGTTAGATCATGAGATGAATCCCAAGATATCAGATTTTGGTATGGCTAGAATATTCAGGAAATGTGAACTTGAGGCAAACACAAGCAGGATCGTGGGAACATATGGGTATGTACCTCCTGAGTATGTGAGAAGAGGCATATACTCAACAAAGTATGACGTTTATAGTTTTGGAGTTCTTATCTTGCAAATCATAAGCGGAAAGAGGACTTCGTGTTATTATGGCTTGCATGAAAATATGAACCTTTTGGAATATGCATATGAGCTGTGGAAGGAAGACAGAGGTGTGGAGTTTGTTGACCCCTCATTGGATGATACATCATCATCTTGTAAAATCATGAGATGCATGCAGGTGGCCCTGTTGTGTGTTCAAGACAACTCTACAGATAGACCTTCCATGTTAGAAGTTGATTCACTGTTGAAGAATGAAGCTGCAGTTATTGGATATTACAGACGTTTTATTAAGGGTTATGTTGTCATTGCCTTACCATTAACTGCCTTACTTAAAAAGGACAACTTCAAGTGGGATTCGCAAGCCACTTTGGCTTTCAATGCTTTTAAACAGGCCATTACACAAGCCCCTGTTCTTGCACTTCCTGATTTCTCTCAACCGTTTGTTTTAGAAACTGATGCTTCAAGTTGTGGTGTGGGTGCCATTCTCAATCAAGCCCAGCATCCCATTGCTTATTTTTCCAAGAAACTCAGTCCTAGGCTCCAAAAGCAATCAACCTACGTCAGGGAATTATTTGTCATTACAGAAGCGATCTCTAAATTCAGACATTACTTGTTAGGCCACAAGTTTATTATAAGGACAGACCAAAAGAGTCTCAAATCTCTAATGGATCAAACAATTCAAACACCTGAGCAGCAAAATTGA	1356	0.3945	MAGTAATFTRILYKLRRSSEADKDLDGNASDLIVFSYLTIKVATENFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEISLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSFDHFLFGVTQGLLYLQEYSNYTIIHRDLKASNVLLDHEMNPKISDFGMARIFRKCELEANTSRIVGTYGYVPPEYVRRGIYSTKYDVYSFGVLILQIISGKRTSCYYGLHENMNLLEYAYELWKEDRGVEFVDPSLDDTSSSCKIMRCMQVALLCVQDNSTDRPSMLEVDSLLKNEAAVIGYYRRFIKGYVVIALPLTALLKKDNFKWDSQATLAFNAFKQAITQAPVLALPDFSQPFVLETDASSCGVGAILNQAQHPIAYFSKKLSPRLQKQSTYVRELFVITEAISKFRHYLLGHKFIIRTDQKSLKSLMDQTIQTPEQQN*	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g03534	451	Gene3D	-	365	430	-	-
	Rops2g03534	451	Pfam	RNase H-like domain found in reverse transcriptase	335	429	IPR041577	-
	Rops2g03534	451	Gene3D	Phosphorylase Kinase; domain 1	9	118	-	-
	Rops2g03534	451	Gene3D	-	299	364	IPR043128	-
	Rops2g03534	451	SMART	serkin_6	47	306	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03534	451	SUPERFAMILY	Protein kinase-like (PK-like)	31	298	IPR011009	-
	Rops2g03534	451	FunFam	Uncharacterized protein	22	122	-	-
	Rops2g03534	451	FunFam	Transposon Tf2-6 polyprotein-like Protein	299	371	-	-
	Rops2g03534	451	ProSiteProfiles	Protein kinase domain profile.	47	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03534	451	CDD	RNase_HI_RT_Ty3	366	450	-	-
	Rops2g03534	451	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	11	357	-	-
	Rops2g03534	451	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Rops2g03534	451	Gene3D	Transferase(Phosphotransferase) domain 1	119	298	-	-
	Rops2g03534	451	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	150	162	IPR008271	GO:0004672\|GO:0006468
	Rops2g03534	451	FunFam	Lectin-domain containing receptor kinase A4.3	121	313	-	-
	Rops2g03534	451	Pfam	Protein kinase domain	48	293	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03534	451	FunFam	Retrovirus-related Pol polyprotein from transposon 17.6-like protein	364	430	-	-
	Rops2g03534	451	SUPERFAMILY	DNA/RNA polymerases	307	444	IPR043502	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03534	Rops-Chr2	65566673	65583065	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03534	24	311	Receptor kinase-like Gene Family	AT4G11480	49.186	6.65e-104	321

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops2g03534		Pkinase	1.4e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03534	-		-	aprc:113847882	538.88