LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03494	ATGCGTTGGTTACCCTCTCTTTCCTTTTCACCTTCCAATAATTCTAATTCTTCTTCATCCGCCGCTGCCGTCGACCACCGCAGGAAGGGGTGGATCTTCGCGAACTCCTCTCAGAAGCGCACCCGCCACGTCAGCACCGACCACGATGTTAGGTGGCACTTCGCCGATGAACCTCAGCCGTTGCCCTTGCCGGAGATTTCCTCCGCCGCCGCCGTACTGCTTCGCCACAGAGACGGTGACTGCCCTCTTCCCTCTCCCAAGGACGCGGCCGCCGCGGCGGTGGCGGATGCTGCACCCTCCGCCGCCACCGGCTTTCGGATGCGGAGTGTTTTTGCTCCCCAAGAGACAAGAAGGAATATGGAACTGGGTGAAAGTAGGTCATCAAAGATGTTGCATCAAGATGTGAGTGGTTGTGAGAGCACTCGAGATAATAATAATAACCACAACTGTGTCGGCGTCCATGGAAGGAGTGCTTCAACTTCAAATAGTCCATTTGCAAGTCCCTCAATAAGCCCACATAGAAGATCAAATGGTGATTTTGTGCCGTATTATTATGTGACTCCAAAAGGAAATCAATTCTGGTCTGCACCAGAGATACCAACCTCTGAAGCAGGTCTGCCACCGCCTGCCTTCTTTGATTTATCAGCATTAGCCACTGAAGCTTCTCCCTCTCCCCATCAAAGTCCACAGGGAAGAAGTCCCCAGAGACACCTAAGAAGCTCAAGTGGACCTCCATCACCCATACATACCATGTCATCCCTTGAGATCCCAACGATGCGTCATGAAAGTAATGCTCTTGTCAGTGTTCACCCCTTACCCCTACCCCCTGGGGTAGCCTTGCCTTCACCATCTGCTGTAGCTAAGTGTGAATCATTGCCAATGAAAAGCCAATGGCAAAAAGGGAAACTCATTGGGCGTGGCACATTTGGAAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTATGTGCAATGAAGGAAGTAGAAATATTTCCTGATGATCCAAAATCTGCAGAGAGTATCAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGAAACATTCAAACATTGTGCAGTATTATGGCAGTGAAATAGTTGAAGATCGGTTTTATATTTATCTAGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGGGATCATTGTGGTGCCATAACAGAATGTGTCATTCGGAATTTCACTCGCCATATCCTTTCAGGGTTGGCTTACTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTGCTGGAGTTGTTAAGCTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGATATGAAGCTAATCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAGGCTGTGATACAAAAGGACAACAGCTCTGACCTAGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCTGCAGCTTTGTTTAAGGTTATGAAGGAGACACCTCCTATACCTGAAACATTGTCATCTGAGGGTAAAGATTTCCTGAGGTGCTGCTTTAAAAGAAATCCGGCAGAGCGGCCAACTGCTGCAGTGTTACTAGAACATCGGTTTTTGAAAAACTCACAACAGCCAGATGTTTTGTCTCCCACCCAGCTGTATAATGGATCAAGCTTCATGGATAAATCCCCTAGTCCCAGTGGGCAATCTGAAAATAAACATTATCAAATTTCTATCCCCAGTGCAAAGATGGAAAAAGGGAAAGCTGCTGAGAGGCGAGGATTTCTCATTCCTTCCTTAGATATTCTCCCTGCATACAGGATCAATGACTCCATCCTGTTCTAG	1905	0.463	MRWLPSLSFSPSNNSNSSSSAAAVDHRRKGWIFANSSQKRTRHVSTDHDVRWHFADEPQPLPLPEISSAAAVLLRHRDGDCPLPSPKDAAAAAVADAAPSAATGFRMRSVFAPQETRRNMELGESRSSKMLHQDVSGCESTRDNNNNHNCVGVHGRSASTSNSPFASPSISPHRRSNGDFVPYYYVTPKGNQFWSAPEIPTSEAGLPPPAFFDLSALATEASPSPHQSPQGRSPQRHLRSSSGPPSPIHTMSSLEIPTMRHESNALVSVHPLPLPPGVALPSPSAVAKCESLPMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAESIKQLEQEIKVLSHLKHSNIVQYYGSEIVEDRFYIYLEYVHPGSINKYVRDHCGAITECVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGYEANLSLKGSPYWMAPELMQAVIQKDNSSDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQQPDVLSPTQLYNGSSFMDKSPSPSGQSENKHYQISIPSAKMEKGKAAERRGFLIPSLDILPAYRINDSILF*	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g03494	634	Gene3D	Transferase(Phosphotransferase) domain 1	294	594	-	-
	Rops2g03494	634	ProSiteProfiles	Protein kinase domain profile.	298	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03494	634	MobiDBLite	consensus disorder prediction	136	173	-	-
	Rops2g03494	634	MobiDBLite	consensus disorder prediction	1	21	-	-
	Rops2g03494	634	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	8	581	-	-
	Rops2g03494	634	MobiDBLite	consensus disorder prediction	220	252	-	-
	Rops2g03494	634	SMART	serkin_6	298	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03494	634	FunFam	Mitogen-activated protein kinase kinase kinase 5	295	596	-	-
	Rops2g03494	634	MobiDBLite	consensus disorder prediction	568	594	-	-
	Rops2g03494	634	PRINTS	Tyrosine kinase catalytic domain signature	377	390	IPR001245	GO:0004672\|GO:0006468
	Rops2g03494	634	PRINTS	Tyrosine kinase catalytic domain signature	414	432	IPR001245	GO:0004672\|GO:0006468
	Rops2g03494	634	PRINTS	Tyrosine kinase catalytic domain signature	486	508	IPR001245	GO:0004672\|GO:0006468
	Rops2g03494	634	PRINTS	Tyrosine kinase catalytic domain signature	528	550	IPR001245	GO:0004672\|GO:0006468
	Rops2g03494	634	ProSitePatterns	Protein kinases ATP-binding region signature.	304	327	IPR017441	GO:0005524
	Rops2g03494	634	Pfam	Protein kinase domain	299	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03494	634	SUPERFAMILY	Protein kinase-like (PK-like)	293	588	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03494	Rops-Chr2	64602178	64607564	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03494	147	603	MAP Kinase Kinase Kinase	AT5G66850	62.500	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Rops2g03494		Pkinase	1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03494	-		-	gmx:100790701	943.34