Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03492 ATGATCATAGGGGAGCAGAATGAGATGATTGAATCTGCAGCAAAGATGCTTTGTGGTCTGATTCAAGCTCGATATGTATTGACAAGGAAAGGTGAGCTTCGTTACTCCACGCCGTGGCTCTTTGCCGGAGCTGAAAGAGCCTTCCCCGTGGGAGTCTTGCTCATTCGTAGAAGGTTTATAGAAGGGGATTTTGATGCATATGTGAAGAGAATTCAACGGCCTTATCTGGGAGGAACTTTGTTGATGGCTTCCCATGTTTTGAAGACACCAATATCTGTCTACATGAGAGATACAAGCTCAGTTGATTTGATAAATATAGCAAAATATGGTGAAGAATATAGGAATGATGAGGAGATTCCCATCAATGTGCTATTTCATGGGAATAAGATCAAGGGTGTGAAGATGTCGTCATCACATTCACCATGCGCCGCGTGTAAGTTTCTTCGTCAGAAATGCACACTGGATTGCGATTTCGCCCCGTACTTTCCGACGGACAACCTGCAACAGTTCGTGAATGTGCACCGTGTGTTCGGTAAAAGTAATGTGAGAAAGATTTTGAAAGAACTCAACGTGACGCAGCGTAACGAGGCCGTTAAGTCACTTACATACGAGGCAGAAGCACGTTTGAGAGACCCCGTTTACGGCTGCGTTGGTTTCGTTTCCGTGCTGCAGCAACGCCTCAAGCAAATCCAAACGGAGCTTCAGAACGCAAAGAAGGAACTATCCCAATACCTTAGCCCCCAGGCTATGAAGTACTTCTTGGCCAATCCCAATGCATTTCTAATGGAACAGAACAACAACCTTCTACAGGGGAATCCTTTTTCCCTTTTTCCTAACTACCCTAACAATATCCCGCAACCGCCGCCGGTTTTGGTGGGACACAGTGGTGTACAGTTGGTTATTAGGGACCCAGAGCAGCAGGAGCTTCTAGAAGCTCAGGATCGAGAACAGCAGCAACGAGAGTTGATGAGGTTCAATAGTGGGTTCGAGCCTTTGGGTTCGGTTGCGGTTGGTGCTGGTTCTGGAACTGGTGGGTTCGGTTCCCAAATTGGTGTTCAGGTCGAGGTGCCACCTTCATTGGCTTTGGGAACCTTTGAAAATGTTAACCCTTATCAGATTCAGCAAGGTGAACACCACCATATTCTTCAACACACTCACACTCCGATTGAGACACAGCTTCTTCTCTCGCCGCAGCAACAGCCACACCAGTCTGAAAGCCAGGATGGTAGGAGTGTCGGTCCTTCTTGTTGA 1251 0.4716 MIIGEQNEMIESAAKMLCGLIQARYVLTRKGELRYSTPWLFAGAERAFPVGVLLIRRRFIEGDFDAYVKRIQRPYLGGTLLMASHVLKTPISVYMRDTSSVDLINIAKYGEEYRNDEEIPINVLFHGNKIKGVKMSSSHSPCAACKFLRQKCTLDCDFAPYFPTDNLQQFVNVHRVFGKSNVRKILKELNVTQRNEAVKSLTYEAEARLRDPVYGCVGFVSVLQQRLKQIQTELQNAKKELSQYLSPQAMKYFLANPNAFLMEQNNNLLQGNPFSLFPNYPNNIPQPPPVLVGHSGVQLVIRDPEQQELLEAQDREQQQRELMRFNSGFEPLGSVAVGAGSGTGGFGSQIGVQVEVPPSLALGTFENVNPYQIQQGEHHHILQHTHTPIETQLLLSPQQQPHQSESQDGRSVGPSC* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03492 416 Gene3D - 55 137 - -
Rops2g03492 416 MobiDBLite consensus disorder prediction 395 416 - -
Rops2g03492 416 Pfam Lateral organ boundaries (LOB) domain 141 238 IPR004883 -
Rops2g03492 416 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 138 323 - -
Rops2g03492 416 Coils Coil 220 240 - -
Rops2g03492 416 ProSiteProfiles LOB domain profile. 140 241 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03492 Rops-Chr2 64528220 64536068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03492 135 351 AS2 family AT5G66870 42.972 6.58e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g03492 LOB 2.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03492 - - cave:132186856 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03492 2 64528220 64536068 Rops2g03492 2 64528220 64536068 ECH
Rops1g01752 1 36370521 36373798 Rops2g03492 2 64528220 64536068 PCT