Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03490 ATGCACCGTCTGTTCCGTACATGCGAGGTGGTGAAGCTGCTGGAAACGCTTAGCCCAATAGATCGTGACGAGTACGTGAAGTCACTTGTATACGAGGCTGATGCCCGTGTCAAACAGCCCGTTCATGGTTGCCTTCACTACATCACTGTGCTGCAACAGCGCATTAAGCAAGCTCAAACCCAGCTTGAGAATGTCAAATTGCAACTTGCACATTGTCAGTACATGGCAGTGGCACAGAACCCTCCCTCTCTTTACCCTAACTACGCCAACAGTATCCCACAACCGCCACCGGTTTTGGCTGGCCACGGTGGTGGACAGTTGGTAAACAGGGACCCAGAGCAGCAGGAGCTTCTAGAAGCTCAGCAGTTGGCTGCTCGAGAGCAAGAGCAGCAGCATGGTGGGTTCGGTGGGTGCTAG 417 0.5348 MHRLFRTCEVVKLLETLSPIDRDEYVKSLVYEADARVKQPVHGCLHYITVLQQRIKQAQTQLENVKLQLAHCQYMAVAQNPPSLYPNYANSIPQPPPVLAGHGGGQLVNRDPEQQELLEAQQLAAREQEQQHGGFGGC* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03490 138 Pfam Lateral organ boundaries (LOB) domain 1 65 IPR004883 -
Rops2g03490 138 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 110 - -
Rops2g03490 138 ProSiteProfiles LOB domain profile. 1 69 IPR004883 -
Rops2g03490 138 Coils Coil 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03490 Rops-Chr2 64432080 64432496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03490 1 95 AS2 family AT5G66870 41.053 4.42e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g03490 LOB 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03490 - - vum:124826574 96.2857