Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03488 ATGGTGTCAAAATCAGCATGTGCGGCATGCCATTATTTTCGTAGGAAATGCACACCGAGGTGCCTTTTGGCACCCTACTTTCCTCGACAGAACCCACAAAGGTTCCTGAACATGCACCGTCTGTTCCGTACATGCGAGGTGATGAAGCTGCTGGAAACGCTTAGCCCAATAGATCGTGACGAGTACGTGAAGTCACTTGTATACGAGGCTGATGCCCGTGTCAAACAGCCCGGAGCAGCAGGAGCTTCTAGAAGCTCAGCAGTTGGCTGCTCGAGAGCAAGAGCAGCAGCATGGTGGGTTCGGTGA 306 0.5261 MVSKSACAACHYFRRKCTPRCLLAPYFPRQNPQRFLNMHRLFRTCEVMKLLETLSPIDRDEYVKSLVYEADARVKQPGAAGASRSSAVGCSRARAAAWWVR* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03488 101 Pfam Lateral organ boundaries (LOB) domain 6 82 IPR004883 -
Rops2g03488 101 ProSiteProfiles LOB domain profile. 5 101 IPR004883 -
Rops2g03488 101 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03488 Rops-Chr2 64276547 64276852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03488 3 77 AS2 family AT1G65620 50.667 1.93e-24 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g03488 LOB 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03488 - - pda:103709185 95.1301