Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03439 ATGCCGTCGTCGGATTCCGGCGAGAACCGCCGAGCTACCAAGCCTCAAAACCGTGCCGGAGCTCCACCGCCGCCGGAGCAAGAGAACCTCCCTTGTCCTCGCTGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAACTACTCCCAGCCTCGTCACTTCTGCAAGTCTTGTCGCCGGTACTGGACTCACGGTGGCACTCTCCGTGACATCCCCGTCGGTGGTGGCAGCCGGAAAAACGCGAAACGCTCCCGCACCCACCACTCCGCCGCGACTTCCTCCTCTTCAGCCGTCACTTCGGCACAGGACCACCCCTTTCCTCCAATGGCTCACGTCGCTGCCACCATGCCGTTCGGAGGCGGAGTTGACGGCGATGTCAAACAGAATGTTAACGTTTGCGGGAGCTTCACTTCGTTGCTGAACAATACCCAAGGCTCCGGCTTTGTTGCACTTGGTGGGTTTGGGCTTGGGCTTGGACATGGGCTCGATGAGATGGGCTTTGGAATTGGGCGAGCGGGTTGGGCCTTTCCGGGAATGGTGGATGGTGGTGCAGTTGCAGCTTCTGGTGTTGGTAACACGTGGCAGTTAGAAGGTTCAGAAGGTGGCTTTGTTAATGGAGATTGCTTCTCTTGGCCCGGACTTGCAATTTCAACACCGGGAAATGGTCTCAAATGA 681 0.5698 MPSSDSGENRRATKPQNRAGAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHSAATSSSSAVTSAQDHPFPPMAHVAATMPFGGGVDGDVKQNVNVCGSFTSLLNNTQGSGFVALGGFGLGLGHGLDEMGFGIGRAGWAFPGMVDGGAVAASGVGNTWQLEGSEGGFVNGDCFSWPGLAISTPGNGLK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03439 226 MobiDBLite consensus disorder prediction 89 104 - -
Rops2g03439 226 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Rops2g03439 226 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Rops2g03439 226 MobiDBLite consensus disorder prediction 1 32 - -
Rops2g03439 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 146 IPR045174 GO:0003700|GO:0006355
Rops2g03439 226 MobiDBLite consensus disorder prediction 71 110 - -
Rops2g03439 226 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03439 Rops-Chr2 63335886 63337093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03439 1 226 C2C2-Dof Transcription Factor Family AT3G50410 48.047 3.74e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops2g03439 zf-Dof 7.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03439 - - cam:101488684 315.079