Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03422 ATGACCTTTGATGGAACAATGGTTAGACGGGAATCATCAGTCATAGCGAGCTTATCATATCAAACTGCTGATTTTAAAATGGAAGTACTTCCTTGTTCTGCTGTTCAGTATGCAGGGGAATCTGATTGCTCTCAGCTGAATTCAGAAACAGCTCATGCATCCAAGGGAAAACCCGAATACCCCAAAAATGGCGAGCAGGTTAAATTGGAAGATGATCGATTGAATGACTCATTACTGAAGGCAGAAGGGCCTCAGATTGAAAGGCAAGGTAAAGTGCAAGAGACTGTTTGTGAATTCTTGACTAATTCTGATTGCCAATGGAGTGGAGCTTCATGTAGTGCCTATCAAGTAAAAGACCAAAAGGAATCTTGTAGTTTCCATGATGTTGAAGATGATGAAATAAATGAACCTTGCTTAACCTCTGAGAACTCTCCCTCTGTTGTGGATATGATTGAAACTGAATCGCCAAACAACAGTAGGGAAGGAGAATTGTCAGTTTCTGAACCCACTTGGCTGGAGGGGGATGAGCCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAAATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCTACTCATGACCGGAAGAGATATTTTGTCATTTTTTCCCCTCTCACAAGGAATTTTTCTTGGGCTGATATGCTGCTTGTTCTATCAATTGATGAGTTTCCCCAGCCTATCACATATGAAGCTCATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCACGAAGGTTTATAACACAAAAGCTAACCATTGGCATGCTGAACATTATCGATCAGCTTCATTCTAATGGTTTGATAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAATTTGCTATGGAGGCTTCTTGTTGTAATGGTTATTCGGATTTTGGAAGAATGCTTCTCAAGCTGCAAAATAGCATAGTGCAGAACTACATAAGTGGTGACTGGATAAAACATTCATCGTATACTTGGGCTGAACGATGCCAAAATGCAAATAGTGCTGAATCAGTAGAGCTTCTGAAGGAGGAATTGTTTGGTTCTATTTTGTGGAATGATGTCAACATTCTCCGAGATGCACTGGTGCAACCAACATTAGGTTTCGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTTCCTTCCTTTTCTAGCAGCAAGGATATGCCGCAGCAAACCTCTGATGGTTTGTACCAAGTAAGCCTTCAGGTTGGTACAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGACACACATGCTTCACGGGCAGAAACCAAGGGTTCAGATCACTCTATTACTCTTGAGACTGACCCAGGTTTCTTTAAGAATCGGGACACCTTGAGTGCATTAGCAGCTGAGACTTCTAAACAGGAAGATGTTAGAGAGGTACCTGTGGCAACTGATTTACCTAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTGAGATCTTACATGGCAATGGAATGAAATCAACACCTATGAATGAAATGACTGGTAAAAAATTTACAGAACCTGGTACGAGGAATCGACAATGTGTAGCTTATATTGAAGCCAAGGGAAGGCAGTGTGTAAGACGGGCAATTGATGGTGATATTTACTGTTGTGTACATTCTCGTTTTTTGGGAAGCTCAGGAAAAGCTGAAAGACCTTTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAGATGTAAGCATCATTCCCTTCCTGGCTCTTCATTCTGTAAGAAACACCGGCCCTGTGCTGAAACAGATGAGACCTCAAATTTAGCCCATAGTACACTGAAGAGAAAACATGAAGAAAATTACAGTGGTTCAGAGGGCTTGATCTGCAAAGACATGGTATCGGTAAATGCTGAAAGTCCATTACAAGTAGATCCAGTGTCAGCCATTGATGGTGATTCCTTCCTTGGAAGAAACAACTCAGGCAAGAAGCCCATCCTTTCTGGCAATGATCATAATGCAATGGAGGCACTTCACTGTATAGGTTCTCCTCCATATGGTGAGGAACCTTGTTTAGAAGCACCAAAGCAATATTTCTTGTACTGTGAAAAGCACCTTCCAAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAAGATAATATCGAAAGACGTGTTTACAGAAATTTTGAGGGACTGCTGCTCATGGGAGCAAAAGGTGAATCTGCATAGAGCTTGTGAGCTTTTTTACAAGCTATTCAAAAGCATTTTGTCACTAGGAAACCCAGCATCTAAGGAAGTTCAATTCCAATGGGCTTTGACTGAAGCCTCAAAAGATACTAGTGTTGGAGAATTCTTTACAAAGTTGGTTCATGGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGACATAGATGTATCCTCACTCATGGAAAGACCGCCTCTCCTTCCTTCCCTGATGAATGACAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATCTGCAGTGCAGAATTTCCTGATGACCAAACACTTGGTAACCATTGGATGGACAATCATAAAAAGGAAGCACAGTGGCTGTTCAGGGGTTATGCCTGTGCTATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGCGGGAGTCACTTTGGAAATATGGAGCAACTATGGTGGCATGTTCTATCACTTCACACTGTTGAATTTAAGTCATCAAAAGCTCCTGAGCAGCAAACTAAGTCTATTTGCGAGGATTCTCTAGAAAAATTGGAGCAGGGAAATTCAGCATCTCTGGAAAATAATTCTGGGAATCCAGGCGGTTTGAGGAAGTTCACTTGCAGGTTTTGTGGGTTGAAATTTAATTTACTACCTGACCTAGGTCGGCATCATCAAGCCGCTCATATGGGGCACAATCTAGTTAGCAGCCGCCCTGCAAAGAGAGGAGTTCGTTATTATGCTCATAGATTAAAATCTGGCAGACTTAGCCGTCCTAAGTTTAAAAAGGGTTTGGAAGCAGCATCACATAGGATACTGAGGAGGGCTAATGCTAATTTAAAGAAGCGTATTCAGGCAACAAAGTCACTTGACAAGGGGGTAACAAGCATACAAACTCATGTAACTGAGACAGCAAATATCGGTAAATTGGCAGAATATCAATTCTCATCAGTTGCAAAGGTTTTGTTTTCTGAGATTCAGAAGACTAAACCTCAGCCTAGCAATCTTGATATTTTGTCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTCAAAGCCTCACTAGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAAGCAGCGAAACTTTGCAGTGAGCATTACCTTCTGGTAAATTGGCACCAGGATGGGTTCATATGTCCCAGAGGTTGTAAGGTATTGAAGGACCAGAGCCTGCTCTCTCCCTTAGCATCTCTTTCTAATGGTTTCCTAAAGTCAAAATCTGTAAATATATCAGATTCTGCGAACAATGAGTTGGAAGTGGATGAGTCTCACTACATCATCAGTTCACACCATTTAAAATTAGGGTCCCTGCAAAAGGCTATAGTATTATGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGAAATTCTGAATATTCTTAGGCATGGGTCCAATGAGCAAGATATAAGTCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGCTTGATCAATCGCTTAGTCTTGATTCTGAGAGTCTGCAACTGAGATGCTCTTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCGTATGATGAAAATGGTCGAATAACATTGGAGGAAGGTTACCTTGTGTATGAGTGTAATCACATGTGCAGATGTAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGGTGGGCAGTAAGGGCTGGTGAGGCAATTTTGCGTGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGATGAGCAGGAGGCACATGACAGACGCAAAAGATATGGCAAAGAACATTGCAGTTATTTCTATGACATTGATGCTCATGTTAATGATATGAGTAGATTGATCGAAGGACAGGCTCGATATGGCATTGATGCTACTAGATATGGAAATGTCTCTAGGTTCATCAATAACAGCTGCTCACCCAATCTTGTGAGTTACCAAGTTCTTGTGGAGAGCATGGATTGTCAGTGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAGTTGACATATAATTATCAGTATGAGCTTGTGCCTGGAGAAGGATCTCCATGTCTTTGTGGATCTTCAAAGTGCCGGGGACGCCTTTACTAG 4581 0.4139 MTFDGTMVRRESSVIASLSYQTADFKMEVLPCSAVQYAGESDCSQLNSETAHASKGKPEYPKNGEQVKLEDDRLNDSLLKAEGPQIERQGKVQETVCEFLTNSDCQWSGASCSAYQVKDQKESCSFHDVEDDEINEPCLTSENSPSVVDMIETESPNNSREGELSVSEPTWLEGDEPVALWVKWRGKWQAGIKCARADWPLSTLKAKPTHDRKRYFVIFSPLTRNFSWADMLLVLSIDEFPQPITYEAHQAGLKMVKDLTVARRFITQKLTIGMLNIIDQLHSNGLIETARDVMVWKEFAMEASCCNGYSDFGRMLLKLQNSIVQNYISGDWIKHSSYTWAERCQNANSAESVELLKEELFGSILWNDVNILRDALVQPTLGFEWKTWKHDVMKWFSTFPSFSSSKDMPQQTSDGLYQVSLQVGTKRPKLEVRRADTHASRAETKGSDHSITLETDPGFFKNRDTLSALAAETSKQEDVREVPVATDLPSNLTNKWNEIVVEAADSEILHGNGMKSTPMNEMTGKKFTEPGTRNRQCVAYIEAKGRQCVRRAIDGDIYCCVHSRFLGSSGKAERPFSVDTPMCGGTTVLGTRCKHHSLPGSSFCKKHRPCAETDETSNLAHSTLKRKHEENYSGSEGLICKDMVSVNAESPLQVDPVSAIDGDSFLGRNNSGKKPILSGNDHNAMEALHCIGSPPYGEEPCLEAPKQYFLYCEKHLPSWLKRARNGKSKIISKDVFTEILRDCCSWEQKVNLHRACELFYKLFKSILSLGNPASKEVQFQWALTEASKDTSVGEFFTKLVHGEKERIKLIWGFNDDIDVSSLMERPPLLPSLMNDSFDNENAIKCKICSAEFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGSHFGNMEQLWWHVLSLHTVEFKSSKAPEQQTKSICEDSLEKLEQGNSASLENNSGNPGGLRKFTCRFCGLKFNLLPDLGRHHQAAHMGHNLVSSRPAKRGVRYYAHRLKSGRLSRPKFKKGLEAASHRILRRANANLKKRIQATKSLDKGVTSIQTHVTETANIGKLAEYQFSSVAKVLFSEIQKTKPQPSNLDILSIARSACCKVSLKASLEEKYGILPERLYLKAAKLCSEHYLLVNWHQDGFICPRGCKVLKDQSLLSPLASLSNGFLKSKSVNISDSANNELEVDESHYIISSHHLKLGSLQKAIVLCDDISFGKESIPVICVVDQEILNILRHGSNEQDISLSRPWESFTYVTKPMLDQSLSLDSESLQLRCSCSFSTCCPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDENGRITLEEGYLVYECNHMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDEQEAHDRRKRYGKEHCSYFYDIDAHVNDMSRLIEGQARYGIDATRYGNVSRFINNSCSPNLVSYQVLVESMDCQCAHIGLYANRDIALGEELTYNYQYELVPGEGSPCLCGSSKCRGRLY* 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03422 1526 MobiDBLite consensus disorder prediction 432 454 - -
Rops2g03422 1526 Pfam SET domain 1382 1502 IPR001214 GO:0005515
Rops2g03422 1526 ProSiteProfiles Zinc finger C2H2 type domain profile. 877 900 IPR013087 -
Rops2g03422 1526 ProSiteProfiles SET domain profile. 1371 1503 IPR001214 GO:0005515
Rops2g03422 1526 ProSiteProfiles Zinc finger C2H2 type domain profile. 980 1008 IPR013087 -
Rops2g03422 1526 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 27 1526 - -
Rops2g03422 1526 ProSiteProfiles Post-SET domain profile. 1510 1526 IPR003616 -
Rops2g03422 1526 MobiDBLite consensus disorder prediction 432 450 - -
Rops2g03422 1526 SMART c2h2final6 843 866 IPR013087 -
Rops2g03422 1526 SMART c2h2final6 877 900 IPR013087 -
Rops2g03422 1526 SMART c2h2final6 980 1003 IPR013087 -
Rops2g03422 1526 SMART c2h2final6 911 934 IPR013087 -
Rops2g03422 1526 Pfam Pre-SET motif 1232 1363 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03422 1526 Pfam Zinc finger C2H2-type, 3 repeats 879 1004 IPR040689 -
Rops2g03422 1526 ProSitePatterns Zinc finger C2H2 type domain signature. 982 1003 IPR013087 -
Rops2g03422 1526 SUPERFAMILY SET domain 1221 1516 IPR046341 -
Rops2g03422 1526 Gene3D SET domain 1221 1526 IPR046341 -
Rops2g03422 1526 Gene3D Classic Zinc Finger 832 903 - -
Rops2g03422 1526 SMART preset_2 1229 1355 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03422 1526 ProSitePatterns Zinc finger C2H2 type domain signature. 845 866 IPR013087 -
Rops2g03422 1526 ProSiteProfiles Pre-SET domain profile. 1292 1368 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03422 1526 ProSitePatterns Zinc finger C2H2 type domain signature. 913 934 IPR013087 -
Rops2g03422 1526 SMART set_7 1371 1509 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03422 Rops-Chr2 62944407 62969585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03422 146 1525 C2H2 Transcription Factor Family AT2G23740 50.499 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g03422 Pre-SET 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03422 - - gmx:100808203 2471.04