Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03418 ATGCGTACGTGTGCGGAGAGAGGGTGGGATTCACGTGACATCAACAGAAAGAGTACAGTTGGGAGAGGAACAGAGAAATGCAGTGAAGAAGGTTGGGCTGTCAATTTGTCCATCAGGAGAGAAGATGATGATGATGATGAAGATGGTGGTGGTGGTGGTGATGATGATGATGATGAGCAAGATCTTAACATGGGAATAGCAACACCTTCACTTCCTTCCACTCTCTCACATTCAACCACACACCAATATCATTCCTTTTATTCAATCTTGGACAAGCCTGAAGAAACTTGTTCCAATTCTATGTCCCAGGATTTTCACCAAGGAATCTTCACTTTCTCGAATGGTTTCGAGAGATCTGCAACAGTGACTCACCAAGAACAACACCATCAACACTTGGCTCAGCAGATTCGAAGGGATAACAACAAAGTGAAGGTGCAAGGTTTCGAGCCACCACCACAACCACAACCACCACTAGTTGGCATAGAAGAAGAAGAACCTGGTGGCCTGCCTGTTTATGAAACCGTCGGAATGTTGTCGGAGATGTTCAATTTCCCTCACGGCGCAACTACCGCCGCCGCCGCAGCTGAATTGTTGGAGCAACAACAACAACAACCAATGACGACGACGTTTCGATCCTCAACGAGGCCACAAGGAGTGGGGAGTGAATGGTACGGAAACAGACAAGGGATGTTAACTGGGTCAGGAACCTTGGGAGATTCAAAGAATCATCATCAGAGCAGTAGTGTGAATAACCGTGACAGTAGTAGCAGCAGCAGCATAGTTCACCATCATCATCACCATAACAACAACAACAACCACCATCATCATCATCAGATGTCAAACATTAATGCCGATTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCACAAACCAGATCTCCTTCCCCTTCTCCTCATCCTCATCCTCATCATCATAACAACCACACCACCAATCCTTCCACTACTTCCCTTCAAGGGTTTGGTCCTGGAGCAGGAGGGTCTTTTGGTCAATTCACATGGCTTCCTGGAACTGCTCAACAAGGACAACACCACCACCCAGCTGAGATTGGAGGTGTTTTAGAAGGGCAAGGCCTTTCATTATCCTTGTCTTCACACTTGGAAGCTGCAAAAGCTGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCAAGGAGGTGGTGGTGGAGGAGGAGGAGGACCCTCTTCTTCAGTTCAGTATCATTACAAGAATCTCGGGGTTCATGGGGGACTTGGACAGAACCACCAGGGACATGTCGGGTTTGGTTCATCATCCTTGGGTGTGGTCAATGTGTTGAGGAACTCAAAATATGTTAAGGCTGCTCAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTCAAGAAGAACAAGTTCACTAGGCAGCTTTCAAACCCTAATTCCAATCCTGGAGGTAGTAGTGGTGGTGCTGCTTCCTCTTCATCAAAAGATGCTCCTCCTTTGTCGCCGGCTGATAGGATTGAACATCAGAGAAGGAAGGTCAAACTTCTAACCATGCTTGATGAGGTGGACAGAAGATACAGCCACTACTGCGAACAAATGCATATGGTGGTGAACTCATTTGACTTGGTGATGGGTTTTGGAGCTGCAGTTCCATACACTACACTGGCTCAGAAAGCAATGTCTCGTCATTTCCGGTGTCTAAAGGATGCAATAACCACGCAGTTGAAGCATAGTTGTGAATTGCTGGGAGAGAAAGATGGGGCAGGGACCTCAGGCTTGACTAAAGGAGAGACACCAAGACTTAAGTTGCTTGAACAAAGCTTAAGACAGCAAAGAGCCTTTCACCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGAGCATCAGAAGAGAGAGAAAAGAACCAAAGCAACAACAGCAGCAGCAACAACAACAGTGGTGGTGGCCAGCTAGCACAAACTCCAACACCCTCAACCACAGCATCAACAGCAACAGCGCCACCACCACCAACAACAACAAGAAAAAGATCCGATATCAATGCCAATGAAAGCGATCCATCACTTGCAGCAATAAATAGACAAGGGTTCTCAGAAAACCAAGCAGCAACAACAAATAAGCAGTTATCCACCACCACCAACAAAGCCACCACCTCTGAGGTGGCGCCACCGGTGTGCTCCGACTCAGACATTCCCCCACCACACAAAATGGTCACCGATGACACGTGTCGCCATGGCAGCTTCGATTATGGGACCGCTTCTGCTACCTCTGACATTGGTTCCCCTCTTATCAGATTTGGGACCACTACCGCTGGTGATGTGTCACTCACCTTAGGGCTACGTCACGCCGGGAACATGCCAGAGAAAACAACTCATTTCTCTCTTAGGGACTTTGGAGGCATTTAA 2622 0.4729 MRTCAERGWDSRDINRKSTVGRGTEKCSEEGWAVNLSIRREDDDDDEDGGGGGDDDDDEQDLNMGIATPSLPSTLSHSTTHQYHSFYSILDKPEETCSNSMSQDFHQGIFTFSNGFERSATVTHQEQHHQHLAQQIRRDNNKVKVQGFEPPPQPQPPLVGIEEEEPGGLPVYETVGMLSEMFNFPHGATTAAAAAELLEQQQQQPMTTTFRSSTRPQGVGSEWYGNRQGMLTGSGTLGDSKNHHQSSSVNNRDSSSSSSIVHHHHHHNNNNNHHHHHQMSNINADSAAAMQLFLMNPQTRSPSPSPHPHPHHHNNHTTNPSTTSLQGFGPGAGGSFGQFTWLPGTAQQGQHHHPAEIGGVLEGQGLSLSLSSHLEAAKAEELRMGDSGFLYYNQGGGGGGGGGPSSSVQYHYKNLGVHGGLGQNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFTRQLSNPNSNPGGSSGGAASSSSKDAPPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDLVMGFGAAVPYTTLAQKAMSRHFRCLKDAITTQLKHSCELLGEKDGAGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGASEEREKNQSNNSSSNNNSGGGQLAQTPTPSTTASTATAPPPPTTTRKRSDINANESDPSLAAINRQGFSENQAATTNKQLSTTTNKATTSEVAPPVCSDSDIPPPHKMVTDDTCRHGSFDYGTASATSDIGSPLIRFGTTTAGDVSLTLGLRHAGNMPEKTTHFSLRDFGGI* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03418 873 Pfam Homeobox KN domain 642 681 IPR008422 GO:0003677|GO:0006355
Rops2g03418 873 MobiDBLite consensus disorder prediction 315 329 - -
Rops2g03418 873 SMART prehox3 436 573 IPR006563 -
Rops2g03418 873 MobiDBLite consensus disorder prediction 41 62 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 201 278 - -
Rops2g03418 873 SUPERFAMILY Homeodomain-like 627 692 IPR009057 -
Rops2g03418 873 MobiDBLite consensus disorder prediction 770 796 - -
Rops2g03418 873 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 296 714 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 472 498 - -
Rops2g03418 873 Gene3D - 628 690 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 472 508 - -
Rops2g03418 873 CDD homeodomain 625 686 IPR001356 GO:0003677
Rops2g03418 873 MobiDBLite consensus disorder prediction 1 78 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 770 806 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g03418 873 SMART HOX_1 625 689 IPR001356 GO:0003677
Rops2g03418 873 Pfam Associated with HOX 441 572 IPR006563 -
Rops2g03418 873 MobiDBLite consensus disorder prediction 201 257 - -
Rops2g03418 873 ProSiteProfiles 'Homeobox' domain profile. 622 685 IPR001356 GO:0003677
Rops2g03418 873 MobiDBLite consensus disorder prediction 707 755 - -
Rops2g03418 873 FunFam BEL1-like homeodomain protein 4 628 690 - -
Rops2g03418 873 Coils Coil 688 711 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 297 330 - -
Rops2g03418 873 MobiDBLite consensus disorder prediction 695 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03418 Rops-Chr2 62828563 62840382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03418 818 871 Homeobox Transcription Factor Family AT2G23760 51.613 5.44e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops2g03418 POX 1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03418 - - gmx:100814959 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03418 2 62828563 62840382 Rops2g03418 2 62828563 62840382 ECH
Rops2g03418 2 62828563 62840382 Rops1g01707 1 35839100 35846540 ECH
Rops1g01707 1 35839100 35846540 Rops2g03418 2 62828563 62840382 PCT