Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03417 ATGGGTTGGTTTACCAAGTTGATTAAGGGATCCAACCATAAATCTTCAGGACGACAATATCATGGGAATTATGGAGATGACAGAATTTTGAATAATCATGATGATTCAGCCGGTGATTTGACGGATATTGAGGAAGAAGAAATTGATCGTGCAATAGCTCTCTCTCTTTTAGAGGAAGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAATCTGAAGATGAACAGCTGTGCCCACTTGATGATGAGGAAGATGATCATGTTGGTGATGTTCAACAAGATGAAGATGATCATCTTGCTAAAATTCAACAGGATGAAGACAAAAATCTTGCTGAAGTTCAACTCGAGGAAGATGAACAACTTGCCAGAGCAATTCAAGAAAGTTTGAGCATTGGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTTTTTCAAACCTCTTTCCACCTGTGTACAGAATCTGTGCTGGCTGCAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGCTATTTGGCATCCAGAATGTTTCTGTTGCCATGCTTGCAATCTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGTCGTTACCATAAGTCGTGCTATAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCACCAAATTCATCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGAAACAAAAATATTGTCCATCACATGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCTGTGGACACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGTCTTGAGTGTCTTGACTCAGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAATAGAGCAGCAAATTCCCATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAAACTATCTCCACTATTTTAAGGAGACCAAGGATTGGGGCAGGCTACCAGGTTATAGATATGATAACTGAGCCTTTTAGGCTGATCCGTCATTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCCTGGCACATGAAATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGCAATCTGAGACCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATGTATTCTGGCTCTGGAAGTGATGGTGCATCATCATCTTCATCTTCTTCTTCTTCATCATCTTCCTCCTCTTCATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAATTTGGTGAGTTTTTCAAACACCAGATCGAGTCAGATAGCTCAGCAGCATATGGAGATGGATTCAGACAGGGTAACCAGGCCGTGCTCATGTATGGGCTTAGAAGGACCCTTGACCATATCAGAATGACTGGAAGTTTTCCATAG 1578 0.4132 MGWFTKLIKGSNHKSSGRQYHGNYGDDRILNNHDDSAGDLTDIEEEEIDRAIALSLLEEDQKGKKVIEDDSESEDEQLCPLDDEEDDHVGDVQQDEDDHLAKIQQDEDKNLAEVQLEEDEQLARAIQESLSIGSPPRSDTDSLFQPFSNLFPPVYRICAGCNAEIGHGRFLSCMGAIWHPECFCCHACNLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSSGLIEYRAHPFWKQKYCPSHERDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTISTILRRPRIGAGYQVIDMITEPFRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEMYSGSGSDGASSSSSSSSSSSSSSSSSKKGKRSDFEKKFGEFFKHQIESDSSAAYGDGFRQGNQAVLMYGLRRTLDHIRMTGSFP* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03417 525 MobiDBLite consensus disorder prediction 447 468 - -
Rops2g03417 525 MobiDBLite consensus disorder prediction 61 87 - -
Rops2g03417 525 CDD LIM 185 260 - -
Rops2g03417 525 Pfam Protein DA1 307 521 IPR022087 -
Rops2g03417 525 CDD LIM_DA1 158 210 - -
Rops2g03417 525 MobiDBLite consensus disorder prediction 447 473 - -
Rops2g03417 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 183 - -
Rops2g03417 525 Gene3D Cysteine Rich Protein 154 216 - -
Rops2g03417 525 MobiDBLite consensus disorder prediction 72 87 - -
Rops2g03417 525 MobiDBLite consensus disorder prediction 11 38 - -
Rops2g03417 525 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Rops2g03417 525 SMART lim_4 157 209 IPR001781 -
Rops2g03417 525 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 62 IPR003903 -
Rops2g03417 525 PANTHER PROTEIN DA1-RELATED 2 3 525 IPR045218 -
Rops2g03417 525 FunFam Protein DA1-related 1 152 211 - -
Rops2g03417 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 243 - -
Rops2g03417 525 Pfam LIM domain 158 212 IPR001781 -
Rops2g03417 525 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Rops2g03417 525 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Rops2g03417 525 SMART uim 43 62 IPR003903 -
Rops2g03417 525 SMART uim 117 136 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03417 Rops-Chr2 62770207 62776568 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g03417 DA1-like 8.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03417 - - gmx:100806605 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03417 2 62770207 62776568 Rops2g03417 2 62770207 62776568 ECH
Rops2g03417 2 62770207 62776568 Rops1g01704 1 35752169 35758516 ECH
Rops1g01704 1 35752169 35758516 Rops2g03417 2 62770207 62776568 PCT