LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03416	ATGGACCAAGCCGAATTAACCATCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGAACAAGCCTTCAACTCTTAAGGCGTTTCGATCACCGATCAGAAAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCTGCTTATGTTCGTGTGTTTGTTCGTGTTTTGCGTGATATTTTCAAAGAAGACACTGTTGAGTATGTTTTGGCACTGATTGATGAAATGCTTACAGCAAACCCCAAAAGAACAAGACTGTTTCATGACAGCACCCTTGCAGATGAAGATACTTATGAGCCTTTCCTAATGGGTTCACATCTTGCTTCAACCATTGATGACATATATCTGCATGTAGATAAAATATGTGCTTGTTGGGATTGTGCTTCGAAATTGCTTCGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAAATCCTTGCTTTAATAGTTAGTGTGAGGCCCAAAAATCAGCACGACATGGCTTCAAATGGAGAAGCATCAAATGCAAAGAAACCATTTACCACTATTGATGATGTTTTGATAGAATTGGTGAAATGGCTTTGTGAACAGCTGAAGAAACCTTCTCATCCTACTCGTGGAGTCCTGACTGCTATCAATTGCCTAGCAACTCTACTCAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAAGCGGATGGAGTCAAGTTGCTTGTGCCATTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTTTGAGCCAGCAATTGAATATTTGGCTACTTCAAGGGCCCTTCCAAGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCTTGACCCTTAAAAACTTGCTGTCGAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCTCTGAATACCCTGGAAGAAGGGCTTAATGATAACATCAAGAAACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTTCTTGCCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGAAAATATAAACAATTTTGAAGAGAATGATTTCCAGATTCTAAGGGTCCTAATAACTATTTTGGACACATCCAGTGATCCAAGGACTGTGGCTGTTGCTTGCTTTGACCTTTCACAATTCATCCAGTACCATCCGGCTGGGCGTATTATTGTGACGGACCTAAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAATGCTGAGGTTACTAAAAACGCACTGCTCTGCATTCAACGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGCTTAG	1440	0.4181	MDQAELTIEQVLRRDIPWETYMSTKLISGTSLQLLRRFDHRSESHRAQLLDDDGPAYVRVFVRVLRDIFKEDTVEYVLALIDEMLTANPKRTRLFHDSTLADEDTYEPFLMGSHLASTIDDIYLHVDKICACWDCASKLLRKGNWFIQEKSCKILALIVSVRPKNQHDMASNGEASNAKKPFTTIDDVLIELVKWLCEQLKKPSHPTRGVLTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYFEPAIEYLATSRALPRLIDVVKSSTKEKVVRVVVLTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNTLEEGLNDNIKKLSSFDMYKQEVLLANLDWSPMHKDPIFWRENINNFEENDFQILRVLITILDTSSDPRTVAVACFDLSQFIQYHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA*	480

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g03416	479	Pfam	V-ATPase subunit H	5	350	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Rops2g03416	479	Pfam	V-ATPase subunit H	356	468	IPR011987	GO:0000221\|GO:1902600
	Rops2g03416	479	SMART	arm_5	429	469	IPR000225	GO:0005515
	Rops2g03416	479	SMART	arm_5	222	267	IPR000225	GO:0005515
	Rops2g03416	479	SMART	arm_5	268	309	IPR000225	GO:0005515
	Rops2g03416	479	Gene3D	-	370	471	IPR038497	-
	Rops2g03416	479	FunFam	V-type proton ATPase subunit H	370	471	-	-
	Rops2g03416	479	Gene3D	-	5	358	IPR011989	-
	Rops2g03416	479	PANTHER	V-TYPE PROTON ATPASE SUBUNIT H	1	478	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Rops2g03416	479	SUPERFAMILY	ARM repeat	8	469	IPR016024	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03416	Rops-Chr2	62761524	62768174	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03416	1	479	Primary Pumps ATPases(2)	AT3G42050	73.486	0.0	713

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03416	K02144		-	gmx:100788723	810.061

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