Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03409 ATGACTTATCAAGTCATCAATTCCATCCTTTGGTGCTTTGTTCTCGCTGTTGTGACTGTCACCTTTTTCACTCCAAATGTTAGTTCTCACAAGCAATATTCCAAGATAGAAAGCTTGGATATGAATGTGATTGATCAATGCTGGAGATCGAATCCTGAATGGAGAAGACATAGGCAACAACTTGCCACATGCTCTGTGGGGTATGCAGGGAAGATGACAAACAACATAGGCAAGGACCTCATCCATTATAAAGTTACCGATCCTAGTGATGACCCCATAAATCCCAAACCTGGCACCCTGAGATATGGAGCTTCTAAGATTCAAGGCAAAGTTTGGATCACATTCCAAGGGGACATGCATATTAAGCTCCTGAGACCCCTTCTTATTAGCAGTTTCACCACCATCGATGGTCGAGGTGTCAATGTCCACGTTGCTCATAATGCATGCTTGATGATCTATAAGGCAACCAACATAATCATCCATAGCATTAGGATTCATCACTGCAAACCTCAAGCTCCTGGAATGGTGATGGCTCCTAATGGAAAGGTAATGCCTTTGGGTCACGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAGATTTGGATTGATCATAACACTCTTTATGATTGCCAAGATGGTCTTCTTGATGTCACACGTGGTTCCACTGACGTGACAGTCTCTAACAATTGGTTCAGGGAGCAAAACAAGGTTATGCTTCTAGGGCATGATGATGGGTACGTGAGAGACAAGAACATGAAGGTCACCGTTGTATACAACTATTTTGGACCTAATTGCAACCAGCGCATGCCGAGAATCCGACATGGGTATGCACATGTTGCCAACAATCTTTACATGGGATGGTTGCAATATGCCATAGGTGGAAGCATGGAACCCAGCCTTAAAAGTCAATCGAACCTCTTCATAGCACCCACATTAGGGAGAAAGGAGGTGACATGGAGGAAAAACGGTAATGGAATTGGAGACAAATGGGCATTTCATTCAGTTGGGGATGCTTTTGAAAATGGAGCCTCCTTCATGGAAACAGAAAGTGGACAAGTACCAAAGCCGAATTATAGTCTTGAACAGAGTTTTGAAGTTGTTGATGTCAGATATGTGAAATCATTGACAAGTTCATCTGGCGTGTTACGATGCAGCAAAACCTCTATATGTTAA 1179 0.4292 MTYQVINSILWCFVLAVVTVTFFTPNVSSHKQYSKIESLDMNVIDQCWRSNPEWRRHRQQLATCSVGYAGKMTNNIGKDLIHYKVTDPSDDPINPKPGTLRYGASKIQGKVWITFQGDMHIKLLRPLLISSFTTIDGRGVNVHVAHNACLMIYKATNIIIHSIRIHHCKPQAPGMVMAPNGKVMPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYVRDKNMKVTVVYNYFGPNCNQRMPRIRHGYAHVANNLYMGWLQYAIGGSMEPSLKSQSNLFIAPTLGRKEVTWRKNGNGIGDKWAFHSVGDAFENGASFMETESGQVPKPNYSLEQSFEVVDVRYVKSLTSSSGVLRCSKTSIC* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03409 392 Gene3D - 41 385 IPR012334 -
Rops2g03409 392 SMART amb_all 118 315 IPR002022 -
Rops2g03409 392 Pfam Pectate lyase 129 309 IPR002022 -
Rops2g03409 392 PANTHER PECTATE LYASE 18-RELATED 38 388 IPR045032 GO:0030570
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Rops2g03409 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Rops2g03409 392 SUPERFAMILY Pectin lyase-like 63 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03409 Rops-Chr2 62705457 62707502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03409 72 319 Polysaccharide Lyase AT5G09280 71.774 6.79e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03409 K01728 - gmx:100811216 692.575