Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03405 ATGGCGAGTGGGTTTGAGGAATCAACAACAAGGGCATCGTGTCCTGGAAGCTTGTCTTCATGTTCGGGGAATGGTCGTAACGACACTGGTGATTTCGAATGTAATATATGCTTTGATTTGGCTAAAGACCCAGTGGTCACTCTGTGTGGTCACCTATTTTGTTGGCCCTGCCTCTGCAGGTGGCTCCATCATCACTCCCATTCTCAAGAGTGCCCTGTTTGCAAGGCCCTCGTGCAAGAGGAGAAGCTTATTCCCCTTTATGGGAGAGGAAAACTTCAAACTGATCCCAGGACTAAGTCCTATCCTGGTTTGGAGGTTCCTCACTGTTCTATGAACCAAAGACCCCAAACTCCGGAGCTCAATCCTGCTGGGAATTATGGGTTTAGGGTTGTTTCCACTCCTTTTGGTGGGTTTATCCCTTCTTTGCTTAACATTCAATTCCATCCCTTTCATGATGTCACTGTGTATGGAACAAATTCTGGTTATCCCTTCGGGTTTAATTCATTTCATGGAGGGGTCATGCATGGTTTTCCGCAGCCGACCGGTGCAGAACAGCGGTGTGAGGATAATGTTTTGAAGAATCTTCTTTTGTTGATTGGTTTGCTTGTCCTTATTACGGTCATTTTTGGGTGGTAA 636 0.4623 MASGFEESTTRASCPGSLSSCSGNGRNDTGDFECNICFDLAKDPVVTLCGHLFCWPCLCRWLHHHSHSQECPVCKALVQEEKLIPLYGRGKLQTDPRTKSYPGLEVPHCSMNQRPQTPELNPAGNYGFRVVSTPFGGFIPSLLNIQFHPFHDVTVYGTNSGYPFGFNSFHGGVMHGFPQPTGAEQRCEDNVLKNLLLLIGLLVLITVIFGW* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03405 211 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Rops2g03405 211 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g03405 211 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Rops2g03405 211 SUPERFAMILY RING/U-box 30 87 - -
Rops2g03405 211 CDD RING-HC_AtRMA-like 32 76 - -
Rops2g03405 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 97 IPR013083 -
Rops2g03405 211 SMART ring_2 34 74 IPR001841 -
Rops2g03405 211 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Rops2g03405 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 23 205 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03405 Rops-Chr2 62594876 62595511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03405 24 209 C3H Transcription Factor Family AT2G23780 53.081 1.23e-69 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03405 K10666 - gmx:100814783 318.546