Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03389 ATGAATCCTCGACCCACCGAAGATCATATGATGCACTTCTCTCAGCTATACCCTGATGCATTCACTCAAATAACTCCTCAACAAGGGGAGAAAAAGCCAAGACGGAAGCGAAACAAGAAGAACAAAGGAGGAGAAAACGGGGCTGCAGGTTCCATCAAGAAGAGAAAGCTCAGTGCAGAACAAGTTAAACTTCTTGAGCAAAACTTCATCAATGAACATAAACTTGAGTCTGAAAAGAAGGACCGGCTTGCATTGGAGCTTGGTTTGGATCCTCGACAAGTTGCAGTGTGGTTTCAGAATAGAAGATCACGTTGGAAGAACAAGAAATTGGAGGAAGAGTATTCCAATCTTAAAAATGTCCATGAAACCACCATGCTCGAGAAATGCCACCTTGAAACCGAGGTGTTGAAGCTTGAGGAGCAGCTTTTGGAGGCAAAGAAGGAGATTCAGAAGCTACTAGAACGTGCTAATAGAGTCCCTAGCAACAGCAGCAACAGTTCCAGCTCTTCACAATCACAATCAATGGAACCTGTGAACCCACCATTTATTGAAGAGTTTAGGGTGGAAGAATATGATGATAGTGATGCGTTTTATATTCCAGACACCTATTACATTAATGCGATGGAATGGATTAATCTGTATATGTGA 648 0.4228 MNPRPTEDHMMHFSQLYPDAFTQITPQQGEKKPRRKRNKKNKGGENGAAGSIKKRKLSAEQVKLLEQNFINEHKLESEKKDRLALELGLDPRQVAVWFQNRRSRWKNKKLEEEYSNLKNVHETTMLEKCHLETEVLKLEEQLLEAKKEIQKLLERANRVPSNSSNSSSSSQSQSMEPVNPPFIEEFRVEEYDDSDAFYIPDTYYINAMEWINLYM* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03389 215 Gene3D - 44 117 - -
Rops2g03389 215 SUPERFAMILY Homeodomain-like 52 116 IPR009057 -
Rops2g03389 215 Coils Coil 100 127 - -
Rops2g03389 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 171 IPR045224 GO:0003700
Rops2g03389 215 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Rops2g03389 215 Coils Coil 135 159 - -
Rops2g03389 215 MobiDBLite consensus disorder prediction 1 56 - -
Rops2g03389 215 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Rops2g03389 215 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Rops2g03389 215 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Rops2g03389 215 MobiDBLite consensus disorder prediction 156 178 - -
Rops2g03389 215 CDD homeodomain 53 109 IPR001356 GO:0003677
Rops2g03389 215 SMART HOX_1 51 112 IPR001356 GO:0003677
Rops2g03389 215 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Rops2g03389 215 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03389 Rops-Chr2 62396530 62398152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03389 1 215 Homeobox Transcription Factor Family AT2G18550 49.558 2.60e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops2g03389 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03389 K09338 - gmx:100803948 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03389 2 62396530 62398152 Rops2g03389 2 62396530 62398152 ECH
Rops1g01683 1 35460629 35462644 Rops2g03389 2 62396530 62398152 PCT