Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03384 ATGCCGGTTGATTTGGACAATGTTTCAACAGCTTCAGGTGAAGCTAGTGTCTCTTCTTCTGGTAATCACACAGAACCATCAAAACCAATCACCAAGAAAAGACGAAACCTTCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCTACGAACCGATTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTTCAACTTCATCGAAGGGGTCACAATCTTCCATGGAAGCTGAGGCAAAGGTCGAGTAAGGAGGTTAGAAAGAGGGTCTATGTTTGTCCCGAACCAACGTGTGTTCACCACGACCCTTCTAGAGCATTGGGTGATCTCACTGGGATAAAAAAACACTTTTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCTCACTCTAAAGTTTGTGGCACCAGAGAGTATAAATGTGACTGTGGAACTGTGTTCTCGAGGAGGGATAGTTTCATAACGCATAGAGCTTTTTGTGATGCGTTAGCTGAGGAGAATGCAAGATCTCAGACTCAGAATCAGACTGTTGTGAAGGCTAATTCAGAGTCTGATTCGAAGGTTTTCACCGGTGATTCATCACCGCCACTGGTTACTGCTACCACTGCGGCTACTACTCAGTCAAATAGTGTTATGTCCTCTGCTTTGAAGACACAGAACTTAGAGTTGCCAGAAAATCCACCTCAGATCACTGAGGAACCACAAGCTGTTACTGCTACTGCTTTAAATGGGAGCTGTAGCAGCAGCACTAGCACCAGCTCTACAAGTAATGGTGGTGCTACTACTACTAGCAGTAGTGTGTTTGCAAGCTTGTTTGCTTCCTCAACAGCATCTGGAAACCTACAATCTCGAGCACCGGCATTCACTGACCTAATTAGGGCCATGGGATGTCCAGATCGCCCTGCAGACCTCTCGGCTCCTTCATCATCCGAGGCCATATCTCTATGCCTCTCCACCAATCCTGGGGCATCAATTTTTGGAACAGGAAGGCAGGAATGCCACCAGTATGCACCATCGCCACAACCAGCAGCTATGTCTGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTGCTGCTGCCACAAATGCCTCATTGCTTCGTGGGTTAGGCATTGTGTCATCTTCGGCTTCGGCTTCCTCTTCATCAGGCCAACAAGATAGCCTGCAATGGAGTCAGCGGCAAGTGGAACAACCCGAGAGTGCCTCGGTTCCTGCAGGGCTTGGACTTGCACTTCCTAGTGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGGATTCCCTCAGTGTTTGTTCCTAAGCAGACCACACTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGCAGTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTACTACAGCAACAACTTCCTTTGGTAATGGAGAGTTCTCTGGCAAAGATATTGGTAGGAGCTGA 1542 0.4773 MPVDLDNVSTASGEASVSSSGNHTEPSKPITKKRRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEENARSQTQNQTVVKANSESDSKVFTGDSSPPLVTATTAATTQSNSVMSSALKTQNLELPENPPQITEEPQAVTATALNGSCSSSTSTSSTSNGGATTTSSSVFASLFASSTASGNLQSRAPAFTDLIRAMGCPDRPADLSAPSSSEAISLCLSTNPGASIFGTGRQECHQYAPSPQPAAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASASSSSGQQDSLQWSQRQVEQPESASVPAGLGLALPSDGGSGLKELMMGIPSVFVPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGLDVTTATTSFGNGEFSGKDIGRS* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03384 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 474 IPR031140 -
Rops2g03384 513 Gene3D Classic Zinc Finger 41 107 - -
Rops2g03384 513 MobiDBLite consensus disorder prediction 266 285 - -
Rops2g03384 513 FunFam protein indeterminate-domain 12-like 40 108 - -
Rops2g03384 513 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Rops2g03384 513 MobiDBLite consensus disorder prediction 195 237 - -
Rops2g03384 513 SMART c2h2final6 61 83 IPR013087 -
Rops2g03384 513 SMART c2h2final6 102 132 IPR013087 -
Rops2g03384 513 SMART c2h2final6 137 157 IPR013087 -
Rops2g03384 513 Gene3D Classic Zinc Finger 115 196 - -
Rops2g03384 513 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Rops2g03384 513 MobiDBLite consensus disorder prediction 403 433 - -
Rops2g03384 513 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Rops2g03384 513 MobiDBLite consensus disorder prediction 1 43 - -
Rops2g03384 513 MobiDBLite consensus disorder prediction 9 26 - -
Rops2g03384 513 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Rops2g03384 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Rops2g03384 513 MobiDBLite consensus disorder prediction 403 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03384 Rops-Chr2 62292986 62295927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03384 1 513 IDZ Gene Family AT5G66730 57.565 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g03384 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03384 K25869 - gmx:100806404 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03384 2 62292986 62295927 Rops2g03384 2 62292986 62295927 ECH
Rops2g03384 2 62292986 62295927 Rops1g01676 1 35382652 35386092 ECH
Rops1g01676 1 35382652 35386092 Rops2g03384 2 62292986 62295927 PCT