Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03379 ATGTCTCCTTCAGCCCCTCATAACTCTTCTCCTGATAATGCCACACCTGATAATGCCACGCCTGATAATGCCACCCCTGATGATGCTGATGGATCTTCATCCAAAGGTTCATCTTCGCCAGTGACTCACCAGTCTCAAACGCCACCAGGTTCTTCACACAAATCGTTGCGTCAGGGTAAGGGGGAGGATAGCAACAAGGCAATAATTGGAGGTGCAGTTGGAGGAGGGTTGGTTCTTCTTCTCCTGGTCATTCTTTGTTTCGTTTGTTGTAGGAAGAAGAAAAGAAAGCAAAAGTACTATTATGCAGATCCTTCCCAAGGAAAAGCGAGTAACTATTACAACAGCGGGCAGCACCCTCATCCTAATTGGCAATCAGGTCCAGTTCCACATGGGATGGATCATGTTGTCAGGGTACATCAATCACCTAATGGAATGGGTCCTCCAAGTGGAGTCTGGGGTGCACCACATCCTCTAATGAACAGTGGAGACATGAGCTCCAATTACTCAATGGGAATGGGACCGTCCCCTCTACCTCCTCCATCTCCAGGCCTTTCTCTTACACTCAAGGGAGGTACCTTCACTTATGAGGAATTGGCAGCTGCTACCAGAGGATTTGCTAATGAGAACATTACAGGACAGGGTGGCTTTGGTTATGTACATAAGGGAATATTGCCTAATGGAAAGGAAATAGCAGTTAAGAGTCTAAAACCAGGTAGTGGGCAAGGAGAGCGCGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGCATTTGTGGTGAGCAGAGAATGTTGGTCTATGAATTTGTTCCCAACAAAACTTTAGAACATCACCTTCATGGAGGAAAGGGTCTGCCTACCATGGATTGGCCTACCAGAATGAAAATTGCACTAGGATCTGCCAAGGGGCTTGCCTACCTTCATGAGGATTGCAATCCTCGCATTATCCATCGTGATATTAAAGCTTCGAATGTCCTCCTTGATAATAGCTTCGAAGCTAAGGTGTCTGATTTCGGATTGGCTAAGTTGACTACGGACACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACATGGCTCCGGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAACGACCTTTGGATTTGACAGATGCCATGGACGAGAGCTTAGTGGACTGGGCTCGACCACAACTGAATCGTGGGCTAGAGGAGGATGGCAACTTTGGAGAGTTGGTGGATCCATTTTTGGAGGGCAACTACAATAGTCAAGAAATGGCAAGAATGGCAGCCTGTGCTGCTGCTAGCATTCGTCATTCTGCCAAGAAGCGTCCAAAACTGAGCCAGATAGTAAGAGCATTGGAAGGAGATGTCTCACTGGAAGACTTGAAGGAAGGGATGATGAAGTCTTCAGGGCATAGCAGCGCTTACACCTCTTCATCTGGGAGCTCAGAATATGATACTATGCAATACAATGCTGATATTATGAAGTTCAGAATGGCAATATTGTCGAGCCAGGAATTTGGTGATAGCAGCGAGCTCCCTAGTAAGGAGATGGGCCATCATTAG 1644 0.4623 MSPSAPHNSSPDNATPDNATPDNATPDDADGSSSKGSSSPVTHQSQTPPGSSHKSLRQGKGEDSNKAIIGGAVGGGLVLLLLVILCFVCCRKKKRKQKYYYADPSQGKASNYYNSGQHPHPNWQSGPVPHGMDHVVRVHQSPNGMGPPSGVWGAPHPLMNSGDMSSNYSMGMGPSPLPPPSPGLSLTLKGGTFTYEELAAATRGFANENITGQGGFGYVHKGILPNGKEIAVKSLKPGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGEQRMLVYEFVPNKTLEHHLHGGKGLPTMDWPTRMKIALGSAKGLAYLHEDCNPRIIHRDIKASNVLLDNSFEAKVSDFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELITGKRPLDLTDAMDESLVDWARPQLNRGLEEDGNFGELVDPFLEGNYNSQEMARMAACAAASIRHSAKKRPKLSQIVRALEGDVSLEDLKEGMMKSSGHSSAYTSSSGSSEYDTMQYNADIMKFRMAILSSQEFGDSSELPSKEMGHH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03379 547 FunFam proline-rich receptor-like protein kinase PERK1 183 280 - -
Rops2g03379 547 SMART serkin_6 205 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03379 547 SUPERFAMILY Protein kinase-like (PK-like) 181 479 IPR011009 -
Rops2g03379 547 Gene3D Transferase(Phosphotransferase) domain 1 281 497 - -
Rops2g03379 547 ProSiteProfiles Protein kinase domain profile. 205 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03379 547 MobiDBLite consensus disorder prediction 1 54 - -
Rops2g03379 547 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 525 IPR047117 -
Rops2g03379 547 Pfam Protein tyrosine and serine/threonine kinase 210 408 IPR001245 GO:0004672|GO:0006468
Rops2g03379 547 MobiDBLite consensus disorder prediction 1 62 - -
Rops2g03379 547 Gene3D Phosphorylase Kinase; domain 1 185 280 - -
Rops2g03379 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Rops2g03379 547 FunFam Proline-rich receptor-like protein kinase PERK1 281 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03379 Rops-Chr2 62158342 62163289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03379 66 538 Trihelix Transcription Factor Family AT1G70460 50.939 6.58e-146 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops2g03379 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03379 - - gmx:100805872 737.258