Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03363 ATGATGCATCGTTGTTGCAGTAGCTCTCAGGGACACGTGATGGGCACGTGCACATGTGGTATGTTTCATAGCCAAACCAATTCTTACTCCATGAGGTTCTCTACGCCAAACAACAAACCCTATGATGAATATGAATTCGACATGTACTCCTTCAACCCCTCTTCTTCTTCTGTTGACTGCACACTCTCCCTTGGAACCCCTTCCACACGTTTTACTGAAGATGAAGAGAAACGAAACCGCCACGAACGTCGCTCTTCCGTCACCAATTTTTGTTGGGATTTGTCGCAATCAAAACACAACCCACAATCTCAAAACAAGTCCAGCAGAGGAAACAATGGTAACTCCAACAATGATCCTCTCCTTGCTCGTCGCTGTGCCAACTGTGACACCACTTCCACACCCCTTTGGAGAAATGGTCCTCGAGGCCCAAAGTCATTATGCAATGCTTGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAACGCTGCCGCCGCCACGTCAGCGGTGGCTCCCGGCGGGGTAATGGAGTCGGCGCGTGTATACAATTACCACCACAACAATTCATATTACGCAAACTCACAGATTGGGAACGAGTTACATTTCGTGGATGATTCCGATAGAGACTTTCTCTCATGGAGACTCAACGTTGCAGACAGAACGAGCCTCGTTCACGACTTCACAAGATAA 690 0.4797 MMHRCCSSSQGHVMGTCTCGMFHSQTNSYSMRFSTPNNKPYDEYEFDMYSFNPSSSSVDCTLSLGTPSTRFTEDEEKRNRHERRSSVTNFCWDLSQSKHNPQSQNKSSRGNNGNSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRANAAAATSAVAPGGVMESARVYNYHHNNSYYANSQIGNELHFVDDSDRDFLSWRLNVADRTSLVHDFTR* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03363 229 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
Rops2g03363 229 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
Rops2g03363 229 CDD ZnF_GATA 124 156 IPR000679 GO:0006355|GO:0043565
Rops2g03363 229 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Rops2g03363 229 PANTHER GATA TRANSCRIPTION FACTOR 18 11 229 IPR044272 GO:0003700|GO:0009908
Rops2g03363 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 164 - -
Rops2g03363 229 SMART GATA_3 119 171 IPR000679 GO:0006355|GO:0043565
Rops2g03363 229 MobiDBLite consensus disorder prediction 95 118 - -
Rops2g03363 229 Gene3D - 121 172 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03363 Rops-Chr2 61863196 61864290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03363 18 229 C2C2-Gata Transcription Factor Family AT3G50870 42.756 7.92e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops2g03363 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03363 - - gmx:100790571 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03363 2 61863196 61864290 Rops2g03363 2 61863196 61864290 ECH
Rops1g01646 1 34873893 34874623 Rops2g03363 2 61863196 61864290 PCT