Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03359 ATGGATATGAGAGGCCAAGATAAGGAAATTGAGATGCCTACTACCACTTTGGTTTATAATCTTCCCAATAGGGATTCCACTTCTTCCAAATTATCTTCTCCAACTGTAGGCCAAAGAAGTGATCAACCTGCTCAAACTCACACATTAATTTACAGTGATCCATCTCAAACTTCACTTCACCATCATCTTTATCATCCCCCTTCTCCTCTTCCACCAAACCCACTTCAACTTCAACAACCACATAGACCCCAAAGAGATCCAGATCCAATTTCTTCTTCTCCCATTGCCACCACAAGCATAACAAGCATCCCAATTGTTAGTGGGCCAAACCCCTCAAGAACAGCAATATCTACGCCATTGATTAGATACGGAGAATGTTTGAAGAATCATGCAGCAAGCATGGGGGGTCATGTTATAGATGGATGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCACCCTAGATTCATTGATCTGTGCTGCTTGCAATTGCCACCGCAATTTTCACAGAAAAGAGGGTGAAGGTGAACCACAACATGTTTTCAACTATCATCACAGTTATTATCCCAACAAAAGCAATGGTCATAATAGGATTCATTCAACTCATCTTCAGTTTCCTACACCTCCCTCTTCTCTGCACCAACATCGTAGACTTCCATCACATGGGATCACTACCCCTTCAGCAGGGTTGATTCAGCCTATGATGATGACGACCTTTGGGGGAAGTAGTGGAGGCCCAGCTGAGTCCTCTAGTGAAGATCTCAACTTGTTTCAGTCTAATGATGGAGGCCAATTATCGATGCATCCACAACTATCAAAGAAAAGGCACCGAACCAAGTTCACACAAGAACAAAAGGATAGGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAACAAGATGAGCAGGAAGTACAGCAATTTTGTTCTCATGTTGGTCTAAAAAGACAGGTTTTCAAGGTTTGGATGCATAATAGCAAGCAAGCCATGAAGAAAAAGCAAATGTAA 1014 0.427 MDMRGQDKEIEMPTTTLVYNLPNRDSTSSKLSSPTVGQRSDQPAQTHTLIYSDPSQTSLHHHLYHPPSPLPPNPLQLQQPHRPQRDPDPISSSPIATTSITSIPIVSGPNPSRTAISTPLIRYGECLKNHAASMGGHVIDGCGEFMPSGEEGTLDSLICAACNCHRNFHRKEGEGEPQHVFNYHHSYYPNKSNGHNRIHSTHLQFPTPPSSLHQHRRLPSHGITTPSAGLIQPMMMTTFGGSSGGPAESSSEDLNLFQSNDGGQLSMHPQLSKKRHRTKFTQEQKDRMMEFAEKLGWKIQKQDEQEVQQFCSHVGLKRQVFKVWMHNSKQAMKKKQM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03359 337 ProSiteProfiles 'Homeobox' domain profile. 271 335 IPR001356 GO:0003677
Rops2g03359 337 Pfam ZF-HD protein dimerisation region 121 172 IPR006456 -
Rops2g03359 337 MobiDBLite consensus disorder prediction 90 112 - -
Rops2g03359 337 NCBIfam homeobox domain, ZF-HD class 273 330 IPR006455 -
Rops2g03359 337 Gene3D - 259 334 - -
Rops2g03359 337 MobiDBLite consensus disorder prediction 1 112 - -
Rops2g03359 337 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 122 172 IPR006456 -
Rops2g03359 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 99 330 - -
Rops2g03359 337 MobiDBLite consensus disorder prediction 16 62 - -
Rops2g03359 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 172 IPR006456 -
Rops2g03359 337 FunFam Zinc-finger homeodomain protein 2 261 334 - -
Rops2g03359 337 SUPERFAMILY Homeodomain-like 261 334 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03359 Rops-Chr2 61748713 61750988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03359 122 337 ZF-HD Transcription Factor Family AT2G18350 51.376 1.63e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g03359 ZF-HD_dimer 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03359 - - ccaj:109810490 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03359 2 61748713 61750988 Rops2g03359 2 61748713 61750988 ECH
Rops2g03359 2 61748713 61750988 Rops1g01644 1 34771307 34773277 ECH
Rops1g01644 1 34771307 34773277 Rops2g03359 2 61748713 61750988 PCT