Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03358 ATGGCATCATCTTGGACTCCAAGGCAGAACAAATTGTTTGAACAAGCCCTGGCTTTATATGATAGGGAAACCCCTGATAGGTGGCAGAATGTTGCTAAAGTGGTGGGAAGATCAGTTGAAGATGTTAAAAGGCACTATGAGATCCTCAAAGAAGATGTGGAACGTATTGAGCATGGTCAAGTTCCATTTCCTCGTTATAGAACTAACAGCAACAACACCTAA 222 0.4189 MASSWTPRQNKLFEQALALYDRETPDRWQNVAKVVGRSVEDVKRHYEILKEDVERIEHGQVPFPRYRTNSNNT* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03358 73 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Rops2g03358 73 CDD SANT 4 50 IPR001005 -
Rops2g03358 73 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Rops2g03358 73 FunFam Transcription factor SRM1 1 63 - -
Rops2g03358 73 Gene3D - 2 63 - -
Rops2g03358 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 72 IPR044636 GO:0003700
Rops2g03358 73 SMART sant 1 52 IPR001005 -
Rops2g03358 73 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03358 Rops-Chr2 61709767 61709988 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops2g03358 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03358 - - lja:Lj4g3v0973380.1 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03358 2 61709767 61709988 Rops1g01641 1 34746571 34753535 ECH
Rops3g00562 3 7026536 7028353 Rops2g03358 2 61709767 61709988 ECH
Rops2g03358 2 61709767 61709988 Rops2g03358 2 61709767 61709988 ECH
Rops1g01641 1 34746571 34753535 Rops2g03358 2 61709767 61709988 ECH