LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03355	ATGGGAACTGATGGTTGTAAAGTTTTGGAGACATTACCAAACTCCTTTAAGGTACATCGTAGAATGTGCACAGAACTGAAGAAACTACTTGATAGAATCTTAAGGATATTTCCGCATATAGAGGCAGCACGCCCTCGGTCCTCATCTGGAATACAGTCTCTGTGCTCGCTAAACAATGCAATTGATGAAGCCAAACAACTTCTGCAACGTTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACGGGGGAGTCACTGCTCTCAAAATGCCAAAAGGCAAAAAGATCATTAGAGAAAAGCTTAGTCCAGATTCAGGATTTGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGTCGTGTGACACTTGTGCTGGACCCTGCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAATTGCTCACAGGTCGTTCAACCTCAGATAAGGAATCAATGGAAAATACTGACATTAAATCTCTTCAGTTTGCAGCAGCAAGACTTAATATTACATCCCCAACAACCATCTTAATAGAGAAACGATCTATTAAGAAGTTGTTATCAAATGTTGGACCAAATGATCAACCAAAAAAGGCAATCTTGAAAAATCTGTTGTATCTTCTGATAAAGTATGGAAGCTTCCTCACAGGAGAACAAATGGAGGTCTATTCTCATAGTGAAGAACCGGTGGCAACTGAGAACTCTGGTCATGATTCTCAACGTGTTCATCATGTTAAGTCAGACCCATACTTGAACCATGATCAGTATAGAATTCATGCAAAGGAGTTGGGTAGAGTTACACCCCCTGAGGAATATACATGTCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGAAGTGGATACAGAAATGGTTCGATGAGGGTCATGATATATGCCCAAAGACTAAAAAGAAACTGGTCCATATGTCATTTACTCCTAATGTTGCCATAAAGGACTTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCAAGTAGGCAAGCGGAAGATTTTCACTCGTGGGAGGCTTCCTCCACTTCCATTAGGAGTTATGGAAGTTCTATGAATGATTTGAACTTGCCAATGGATCTTAGTAACATCTCACTTGGATCATTGGATACTAGTTATAGTTCAGATTCCTCCCATGTGAAGGCCAATCGTGGCTTAAATTTGATGCTGATCAAGACTAGTGACAATTCTCAAAGGCATCAATCCCATGCAGAGATACTAGATGCAGATCTGATGCACTTGTCTAAACTCCATGATCGTCAATGGGATTCTCAATGCCAAGTCATTGAAGATCTGAAAACAGATTTGATATGCAATAACAAAGCTTTTTGTTCTGTGTCATCTGAGAATTTCATTGACCCACTCTTGAGATTTCTGAGCACTGCATATGATAAGCATGATTTAAAAGCTCTGAGAGCTGGAACTCAGTTGCTGTCGGAATCTATGAAGTGCTGCAGAAATGGTGTGACAAATTTAAGTGAAGATACATGCAGTATGCTGGTAAATCTTCTTGAGTCTGAAGTGATTGGAGAAGCTCTTGCCATAATGGAAGAACTGTCTAGATATTGGTCTGATAAAGCTAACATTGCAGCTTCGAGTGCACTCACTTCTGTTTCAAAGATCCTTGACTCTGGTAACAAAGAGTTCCAACGAAAAGCTATTAGAATAATGTGTAATTTTTCATCCAATGGTGAGATTTGTCCTTACATGGTATCTCTCGGGTTCATCCCAAAATTACTGCCATTTTTTGAAGACAGGGCCCATTCAAGAGACTGTATGTGTATATTGAAAAACCTTTGTGATACTGAAGAGGGTAGGTTGTCTGTTGCTGAGACTCAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCCGTGATGAGGAAATAGAACTTGCACTGGCTTTGGTGCTCTCATTATGCTCTCAACGCTTGGAATACTGTCAGTTGGTTATGCATGAGGGTATCATCCCTTCTCTTGTCAAGATCTCCAATACAGGAAATGATGGCGCAAAGGCATATGCGTTGGAACTGCTCCGTCTTTTGAGGGATGTTAATGTTGAGAATGAAGATTGCTTTGAGCCAGATCTCAACAATTCTCGAGGTTCTAATAATCACTTTCAAGAAAAGAAATCATCAAAGAAGTCATCATTTTTGAATAAATTCTCACTGTTCTCAAAATCCAGTTCAGTTGCATCAAAAAACAAGAGATGA	2277	0.3996	MGTDGCKVLETLPNSFKVHRRMCTELKKLLDRILRIFPHIEAARPRSSSGIQSLCSLNNAIDEAKQLLQRCSESSKLYLAMTGESLLSKCQKAKRSLEKSLVQIQDLVPVMLAAEISRIIDDLSRVTLVLDPAEEEAGRVVRELLTGRSTSDKESMENTDIKSLQFAAARLNITSPTTILIEKRSIKKLLSNVGPNDQPKKAILKNLLYLLIKYGSFLTGEQMEVYSHSEEPVATENSGHDSQRVHHVKSDPYLNHDQYRIHAKELGRVTPPEEYTCPISLRLMYDPVVIASGETYERKWIQKWFDEGHDICPKTKKKLVHMSFTPNVAIKDLILKWCETNGVSIPDPSRQAEDFHSWEASSTSIRSYGSSMNDLNLPMDLSNISLGSLDTSYSSDSSHVKANRGLNLMLIKTSDNSQRHQSHAEILDADLMHLSKLHDRQWDSQCQVIEDLKTDLICNNKAFCSVSSENFIDPLLRFLSTAYDKHDLKALRAGTQLLSESMKCCRNGVTNLSEDTCSMLVNLLESEVIGEALAIMEELSRYWSDKANIAASSALTSVSKILDSGNKEFQRKAIRIMCNFSSNGEICPYMVSLGFIPKLLPFFEDRAHSRDCMCILKNLCDTEEGRLSVAETQGCISSVVEILGTGRDEEIELALALVLSLCSQRLEYCQLVMHEGIIPSLVKISNTGNDGAKAYALELLRLLRDVNVENEDCFEPDLNNSRGSNNHFQEKKSSKKSSFLNKFSLFSKSSSVASKNKR*	759

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g03355	758	Pfam	U-box domain	272	341	IPR003613	GO:0004842\|GO:0016567
Rops2g03355	758	Gene3D	-	432	607	IPR011989	-
Rops2g03355	758	SUPERFAMILY	ARM repeat	435	711	IPR016024	-
Rops2g03355	758	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	270	345	IPR013083	-
Rops2g03355	758	ProSiteProfiles	U-box domain profile.	270	344	IPR003613	GO:0004842\|GO:0016567
Rops2g03355	758	PANTHER	U BOX DOMAIN-CONTAINING	20	707	-	-
Rops2g03355	758	Gene3D	-	608	715	IPR011989	-
Rops2g03355	758	SMART	Ubox_2	274	337	IPR003613	GO:0004842\|GO:0016567
Rops2g03355	758	SUPERFAMILY	RING/U-box	267	348	-	-
Rops2g03355	758	CDD	RING-Ubox_PUB	272	321	IPR045210	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03355	Rops-Chr2	61661167	61667253	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03355	10	712	U-box Gene Family	AT4G36550	38.429	1.36e-139	426

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03355	-		-	gmx:100798951	1033.48

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Rops2g03355	2	61661167	61667253	Rops2g03355	2	61661167	61667253	ECH
Rops2g03355	2	61661167	61667253	Rops1g01639	1	34716416	34724094	ECH
Rops1g01639	1	34716416	34724094	Rops2g03355	2	61661167	61667253	PCT

Showing 1 to 3 of 3 entries

Previous1Next