Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03355 ATGGGAACTGATGGTTGTAAAGTTTTGGAGACATTACCAAACTCCTTTAAGGTACATCGTAGAATGTGCACAGAACTGAAGAAACTACTTGATAGAATCTTAAGGATATTTCCGCATATAGAGGCAGCACGCCCTCGGTCCTCATCTGGAATACAGTCTCTGTGCTCGCTAAACAATGCAATTGATGAAGCCAAACAACTTCTGCAACGTTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACGGGGGAGTCACTGCTCTCAAAATGCCAAAAGGCAAAAAGATCATTAGAGAAAAGCTTAGTCCAGATTCAGGATTTGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGTCGTGTGACACTTGTGCTGGACCCTGCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAATTGCTCACAGGTCGTTCAACCTCAGATAAGGAATCAATGGAAAATACTGACATTAAATCTCTTCAGTTTGCAGCAGCAAGACTTAATATTACATCCCCAACAACCATCTTAATAGAGAAACGATCTATTAAGAAGTTGTTATCAAATGTTGGACCAAATGATCAACCAAAAAAGGCAATCTTGAAAAATCTGTTGTATCTTCTGATAAAGTATGGAAGCTTCCTCACAGGAGAACAAATGGAGGTCTATTCTCATAGTGAAGAACCGGTGGCAACTGAGAACTCTGGTCATGATTCTCAACGTGTTCATCATGTTAAGTCAGACCCATACTTGAACCATGATCAGTATAGAATTCATGCAAAGGAGTTGGGTAGAGTTACACCCCCTGAGGAATATACATGTCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGAAGTGGATACAGAAATGGTTCGATGAGGGTCATGATATATGCCCAAAGACTAAAAAGAAACTGGTCCATATGTCATTTACTCCTAATGTTGCCATAAAGGACTTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCAAGTAGGCAAGCGGAAGATTTTCACTCGTGGGAGGCTTCCTCCACTTCCATTAGGAGTTATGGAAGTTCTATGAATGATTTGAACTTGCCAATGGATCTTAGTAACATCTCACTTGGATCATTGGATACTAGTTATAGTTCAGATTCCTCCCATGTGAAGGCCAATCGTGGCTTAAATTTGATGCTGATCAAGACTAGTGACAATTCTCAAAGGCATCAATCCCATGCAGAGATACTAGATGCAGATCTGATGCACTTGTCTAAACTCCATGATCGTCAATGGGATTCTCAATGCCAAGTCATTGAAGATCTGAAAACAGATTTGATATGCAATAACAAAGCTTTTTGTTCTGTGTCATCTGAGAATTTCATTGACCCACTCTTGAGATTTCTGAGCACTGCATATGATAAGCATGATTTAAAAGCTCTGAGAGCTGGAACTCAGTTGCTGTCGGAATCTATGAAGTGCTGCAGAAATGGTGTGACAAATTTAAGTGAAGATACATGCAGTATGCTGGTAAATCTTCTTGAGTCTGAAGTGATTGGAGAAGCTCTTGCCATAATGGAAGAACTGTCTAGATATTGGTCTGATAAAGCTAACATTGCAGCTTCGAGTGCACTCACTTCTGTTTCAAAGATCCTTGACTCTGGTAACAAAGAGTTCCAACGAAAAGCTATTAGAATAATGTGTAATTTTTCATCCAATGGTGAGATTTGTCCTTACATGGTATCTCTCGGGTTCATCCCAAAATTACTGCCATTTTTTGAAGACAGGGCCCATTCAAGAGACTGTATGTGTATATTGAAAAACCTTTGTGATACTGAAGAGGGTAGGTTGTCTGTTGCTGAGACTCAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCCGTGATGAGGAAATAGAACTTGCACTGGCTTTGGTGCTCTCATTATGCTCTCAACGCTTGGAATACTGTCAGTTGGTTATGCATGAGGGTATCATCCCTTCTCTTGTCAAGATCTCCAATACAGGAAATGATGGCGCAAAGGCATATGCGTTGGAACTGCTCCGTCTTTTGAGGGATGTTAATGTTGAGAATGAAGATTGCTTTGAGCCAGATCTCAACAATTCTCGAGGTTCTAATAATCACTTTCAAGAAAAGAAATCATCAAAGAAGTCATCATTTTTGAATAAATTCTCACTGTTCTCAAAATCCAGTTCAGTTGCATCAAAAAACAAGAGATGA 2277 0.3996 MGTDGCKVLETLPNSFKVHRRMCTELKKLLDRILRIFPHIEAARPRSSSGIQSLCSLNNAIDEAKQLLQRCSESSKLYLAMTGESLLSKCQKAKRSLEKSLVQIQDLVPVMLAAEISRIIDDLSRVTLVLDPAEEEAGRVVRELLTGRSTSDKESMENTDIKSLQFAAARLNITSPTTILIEKRSIKKLLSNVGPNDQPKKAILKNLLYLLIKYGSFLTGEQMEVYSHSEEPVATENSGHDSQRVHHVKSDPYLNHDQYRIHAKELGRVTPPEEYTCPISLRLMYDPVVIASGETYERKWIQKWFDEGHDICPKTKKKLVHMSFTPNVAIKDLILKWCETNGVSIPDPSRQAEDFHSWEASSTSIRSYGSSMNDLNLPMDLSNISLGSLDTSYSSDSSHVKANRGLNLMLIKTSDNSQRHQSHAEILDADLMHLSKLHDRQWDSQCQVIEDLKTDLICNNKAFCSVSSENFIDPLLRFLSTAYDKHDLKALRAGTQLLSESMKCCRNGVTNLSEDTCSMLVNLLESEVIGEALAIMEELSRYWSDKANIAASSALTSVSKILDSGNKEFQRKAIRIMCNFSSNGEICPYMVSLGFIPKLLPFFEDRAHSRDCMCILKNLCDTEEGRLSVAETQGCISSVVEILGTGRDEEIELALALVLSLCSQRLEYCQLVMHEGIIPSLVKISNTGNDGAKAYALELLRLLRDVNVENEDCFEPDLNNSRGSNNHFQEKKSSKKSSFLNKFSLFSKSSSVASKNKR* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03355 758 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Rops2g03355 758 Gene3D - 432 607 IPR011989 -
Rops2g03355 758 SUPERFAMILY ARM repeat 435 711 IPR016024 -
Rops2g03355 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Rops2g03355 758 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Rops2g03355 758 PANTHER U BOX DOMAIN-CONTAINING 20 707 - -
Rops2g03355 758 Gene3D - 608 715 IPR011989 -
Rops2g03355 758 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Rops2g03355 758 SUPERFAMILY RING/U-box 267 348 - -
Rops2g03355 758 CDD RING-Ubox_PUB 272 321 IPR045210 -
Rops2g03355 758 Pfam Kinesin-associated protein (KAP) 519 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03355 Rops-Chr2 61661167 61667253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03355 10 712 U-box Gene Family AT4G36550 38.429 1.36e-139 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03355 - - gmx:100798951 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03355 2 61661167 61667253 Rops2g03355 2 61661167 61667253 ECH
Rops2g03355 2 61661167 61667253 Rops1g01639 1 34716416 34724094 ECH
Rops1g01639 1 34716416 34724094 Rops2g03355 2 61661167 61667253 PCT