Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03315 ATGTCAACGGCAGCGCCCAAGCGCCACCAGTGGCAATGGGAGAACGCCATCGCGGGCTCCGCCGCCGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGACGTTGTCCGAACTAGATTCCAAGTTAACGATGGCCGAGTTTCTCATCTTCCCAGTTACAAGAATACCGCTCACGCCATTTTCACCATTGCTCGCTCCGAGGGACTAAGAGGGTTGTATGCAGGCTTTCTTCCTGGGGTTCTTGGGTCAACCATTTCATGGGGTTTGTATTTCTTTTTCTATGACAAAGCTAAACAAAGATATGCTAGGAACAGAGACGAAAAGTTGAACCCAGGTCATCATCTTGCCTCGGCTGCAGAAGCAGGAGCTTTGGTTAGCTTGTGCACAAATCCTGTTTGGCTAGTGAAGACAAGAATGCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGATTTATGATGCATTTAGGACCATAATCAGAGAAGAAGGATTTATCGCACTTTACCGAGGGATTGTTCCTGATGCATTTAGGACCTTAATGAGGGAAGAAGGATTTAGTGCACTATACAGAGGGATTGTTCCTGGTTCATTTCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTTCGTAAAATTATTGTTGAGTTGAAGAGTAAGGGAAATAAAATACACCAAAATGCTGATCAACTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCATCATCAAAAATGGCTGCAATACTTCTAACCTATCCATTTCAGGTTATACGGGCTCGACTACAGCAACGACCTAGTGGTGATGGGGTCCCTAGATATATGGACAGTTGGCATGTTATGAAAGAAACTGCACGATTTGAAGGTGTCCGAGGATTTTACAAGGGAATTACCCCAAACCTTTTAAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTCTAAAATTACTTAAACCAGTCAGAAGGAATGACTAA 1008 0.4415 MSTAAPKRHQWQWENAIAGSAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAIFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNRDEKLNPGHHLASAAEAGALVSLCTNPVWLVKTRMQLQTPLHQTRPYSGIYDAFRTIIREEGFIALYRGIVPDAFRTLMREEGFSALYRGIVPGSFLQVSHGAIQFTAYEELRKIIVELKSKGNKIHQNADQLLNSVDYAVLGASSKMAAILLTYPFQVIRARLQQRPSGDGVPRYMDSWHVMKETARFEGVRGFYKGITPNLLKNAPASSITFIVYENVLKLLKPVRRND* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03315 335 Gene3D Mitochondrial carrier domain 2 178 IPR023395 -
Rops2g03315 335 Gene3D Mitochondrial carrier domain 179 334 IPR023395 -
Rops2g03315 335 SUPERFAMILY Mitochondrial carrier 12 180 IPR023395 -
Rops2g03315 335 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 176 IPR044712 GO:0006862|GO:0055085
Rops2g03315 335 Pfam Mitochondrial carrier protein 109 181 IPR018108 -
Rops2g03315 335 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Rops2g03315 335 Pfam Mitochondrial carrier protein 177 221 IPR018108 -
Rops2g03315 335 Pfam Mitochondrial carrier protein 241 329 IPR018108 -
Rops2g03315 335 SUPERFAMILY Mitochondrial carrier 177 323 IPR023395 -
Rops2g03315 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Rops2g03315 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 238 327 IPR018108 -
Rops2g03315 335 FunFam Folate transporter 1, chloroplastic 175 333 - -
Rops2g03315 335 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Rops2g03315 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 219 IPR018108 -
Rops2g03315 335 PRINTS Mitochondrial carrier protein signature 118 140 IPR002067 GO:0055085
Rops2g03315 335 PRINTS Mitochondrial carrier protein signature 25 43 IPR002067 GO:0055085
Rops2g03315 335 PRINTS Mitochondrial carrier protein signature 73 91 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03315 Rops-Chr2 60960006 60976801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03315 32 328 Chloroplast and Mitochondria Gene Families AT2G47490 35.855 6.37e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03315 K15115 - gmx:100809599 550.821