Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03311 ATGGCAGGGTTGTTCTCATTAGGTGGAGGAGGTAGAGGGAACCAAGAGGGTGAAAACCAGAGCGAGATTCCTCCTCCGGAGACCCTATTCTGGTACAACAAACACGACGACGTTTCATCTTACCACCGAGGGTTGGAGCTATGGAATCAACAGCAACAGGAACAAGTGATAGCACATGCTCGACCTCTCCTCCACAGAGATCTCTACTCTTCGATTGGTGTGGGGCCCAGCAGGGTCTCCTCCGATGATCAATCGTCGTCGAGATCGGGCTTCATGGCGGTGAGGTCCGCCGTGGAAGGTGGGAGCGGAGGAGGGATAAGTTGTCAAGATTGTGGGAACCAAGCAAAGAAAGATTGCCCTCACATGAGGTGCAGGACTTGTTGCAAGAGCCGTGGCTATGAGTGCCAAACCCATCTAAAAAGCACATGGGTTCCCGCTTCCAAACGCAGAGAGCGCCAGCAACAACTCACAGCTTTGCAGAGAGACATTTCCAAAAGGCCAAGAGATGCTACTAACCCAACAACCACTTCTTCCACTCGCAACTTGCCCTCAGAGCAAGGGCACTTTCCTGCTGTGGTGAGTTCTCCTGCGGAATTCAGATGCGTGAGGGTTAGCTGCGTGGATGATGCTGATGACAGGTACGCATATCAAACGGCTGTGAACATTGGAGGGCATTTGTTCAAGGGAATTCTCTATGACTATGGTCCAGATAGCAATAATAACAGTAACAATAATAATTATATGGTTGGGGAAACCTCCTCCACCGGTGTTGCCGGAACTCAGCCGTTAAACCTCATCGCCGCTTCCGCTACCGCCGTTTCCTCTTCCGGGGCATACGTTGATCCTTCTTCCTTGTATCAAGTTAACACCTTCATGGGAGGTAGTGGTATGCAATTCTTCTCTCGCCCAAGATCTTGA 918 0.5087 MAGLFSLGGGGRGNQEGENQSEIPPPETLFWYNKHDDVSSYHRGLELWNQQQQEQVIAHARPLLHRDLYSSIGVGPSRVSSDDQSSSRSGFMAVRSAVEGGSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHLKSTWVPASKRRERQQQLTALQRDISKRPRDATNPTTTSSTRNLPSEQGHFPAVVSSPAEFRCVRVSCVDDADDRYAYQTAVNIGGHLFKGILYDYGPDSNNNSNNNNYMVGETSSTGVAGTQPLNLIAASATAVSSSGAYVDPSSLYQVNTFMGGSGMQFFSRPRS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03311 305 MobiDBLite consensus disorder prediction 146 188 - -
Rops2g03311 305 MobiDBLite consensus disorder prediction 146 161 - -
Rops2g03311 305 NCBIfam putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Rops2g03311 305 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 287 IPR007818 GO:0003700|GO:0006355
Rops2g03311 305 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g03311 305 Pfam Domain of unknown function (DUF702) 105 237 - -
Rops2g03311 305 MobiDBLite consensus disorder prediction 169 185 - -
Rops2g03311 305 NCBIfam LRP1 C-terminal domain 188 236 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03311 Rops-Chr2 60857016 60859736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03311 1 305 C2H2 Transcription Factor Family AT3G51060 45.455 5.14e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops2g03311 DUF702 2.1e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03311 - - gmx:100781981 381.333