Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03297 ATGGCCATGAAACTCAACCCCCAAACATTCTTAGAGGAGGTGTCGGCGTTTAATGTTCAAAATGTTGCTTCTTGTGATGATTTCTTCGTTGACGAACTCCTTGACTTTTCTCATGAAGAAGGCCTTTTTGAAGAGGAAGAACCAGAACAACAAAACCATGCTTCTACCTCTGTTTCACCTCAACTTGAGAACCAACACAAAAGCCATGAAATTTGCTACCCTGAATTCAAAGACTTTTTACCCACCAGCGAACTCAGTGTTCCGGCTGATGATGTTGCTGACTTAGAATGGTTGTCTCATTTCGTTGAAGATTCCTTCTCGGAATATTCTATTTCCTTACCCACCGGAACAGAGAACCTCGCAGTGAAAGTGCCTGAACCGGAAAAAAAACCGGTTTCTGCTCAACCCTGTTTCAAAACCCCGGTTCCGGCCAAGGCTAGAAGCAAGCGAACCAGAACCGGTGTTCGTGTCTGGCCACTCATGTCCCCTTCTTTTAACGAGTCATCCTCTTCTTCAAGCTCAACCACTTCTTCTTCCTCTTCTTCACCCACGAGCCCCTTGCTGATTTCCACCACTGTAACTGCAAACATCGACCAGGCATGTTCGCCGGAGAAGAAGGCAAAGCGGAGGGCCATGCCAGATGGTGGTGCGGCTGTGCCGCGGCGGTGCAGCCATTGTGGGGTTCAGAAGACACCTCAGTGGCGAACCGGACCGCTTGGAGCGAAAACATTGTGCAATGCTTGTGGGGTTCGGTTCAAGTCGGGTCGGTTATTACCCGAATACAGACCCGCTTGTAGCCCGACTTTCTCGAGTGAATTGCATTCGAACCATCACCGGAAGGTGCTTGAGATGCGGCAGAAGAAGGAGGTAATGGATGAACCGGTGACCGGTTTAGCATCTCATCAAGTTGTTCCCGGTTTTTGA 924 0.4913 MAMKLNPQTFLEEVSAFNVQNVASCDDFFVDELLDFSHEEGLFEEEEPEQQNHASTSVSPQLENQHKSHEICYPEFKDFLPTSELSVPADDVADLEWLSHFVEDSFSEYSISLPTGTENLAVKVPEPEKKPVSAQPCFKTPVPAKARSKRTRTGVRVWPLMSPSFNESSSSSSSTTSSSSSSPTSPLLISTTVTANIDQACSPEKKAKRRAMPDGGAAVPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEVMDEPVTGLASHQVVPGF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03297 307 PIRSF Txn_fac_GATA_plant 11 305 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops2g03297 307 MobiDBLite consensus disorder prediction 42 64 - -
Rops2g03297 307 Gene3D - 215 291 IPR013088 GO:0006355|GO:0008270
Rops2g03297 307 FunFam GATA transcription factor 201 297 - -
Rops2g03297 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 279 - -
Rops2g03297 307 MobiDBLite consensus disorder prediction 162 187 - -
Rops2g03297 307 CDD ZnF_GATA 222 270 IPR000679 GO:0006355|GO:0043565
Rops2g03297 307 SMART GATA_3 217 271 IPR000679 GO:0006355|GO:0043565
Rops2g03297 307 MobiDBLite consensus disorder prediction 130 187 - -
Rops2g03297 307 MobiDBLite consensus disorder prediction 201 223 - -
Rops2g03297 307 PANTHER GATA TRANSCRIPTION FACTOR 18 296 - -
Rops2g03297 307 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Rops2g03297 307 Pfam GATA zinc finger 223 257 IPR000679 GO:0006355|GO:0043565
Rops2g03297 307 ProSiteProfiles GATA-type zinc finger domain profile. 221 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03297 Rops-Chr2 60369644 60371137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03297 1 307 C2C2-Gata Transcription Factor Family AT5G66320 50.610 9.94e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops2g03297 GATA 3.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03297 - - aprc:113869559 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03297 2 60369644 60371137 Rops2g03297 2 60369644 60371137 ECH