Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03290 ATGCGAACGCTTTGTGACTCTTGTGAGAGTGCCGCCGCTATTGTTTTTTGTGCAGCTGATGAGGCAGCTCTCTGCCGTGCATGTGATGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCCGCCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGAAGTGCCACCCTGTGACATTTGTGAGAATGCACCAGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATGGTACATGTTGGAGGTAAAAGAACACATGGAAGGTATCTTCTTTTTAGACAAAAAGTTGAGTTTCCAGGAGATAAACCTGGTCATGCAGAAAACCCAGGTTCACAACCTCTGGACCCAGGTGAGACTAGAAGAGGACAAAATCCACATCCCAAAATAAAAATGGGAGAAAAACAACAAAATCACAGGATGCCTCTGGTTCCAGAACCTGATGCTGATGGGCATGCCATGATGGAAACTGAAATGTTTGATTTGAACATGAAGCCTCAAAGAATACATGAACAAACATCAAATAATCAGCTATAA 549 0.4317 MRTLCDSCESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSEVPPCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQKVEFPGDKPGHAENPGSQPLDPGETRRGQNPHPKIKMGEKQQNHRMPLVPEPDADGHAMMETEMFDLNMKPQRIHEQTSNNQL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03290 182 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Rops2g03290 182 SMART bboxneu5 1 47 IPR000315 GO:0008270
Rops2g03290 182 SMART bboxneu5 51 96 IPR000315 GO:0008270
Rops2g03290 182 MobiDBLite consensus disorder prediction 126 140 - -
Rops2g03290 182 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Rops2g03290 182 MobiDBLite consensus disorder prediction 104 154 - -
Rops2g03290 182 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 144 - -
Rops2g03290 182 CDD Bbox1_BBX-like 4 47 - -
Rops2g03290 182 CDD Bbox1_BBX-like 55 96 - -
Rops2g03290 182 Gene3D Classic Zinc Finger 2 91 - -
Rops2g03290 182 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops2g03290 182 FunFam B-box zinc finger protein 19 2 92 - -
Rops2g03290 182 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Rops2g03290 182 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03290 Rops-Chr2 60179624 60182188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03290 1 181 C2C2-CO-like Transcription Factor Family AT4G38960 62.431 2.01e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops2g03290 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03290 - - gmx:100780544 342.813