Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g03279 | ATGAGAACTCGGAATGCCGATTCCTCCTCCAAATCCGCAACCCCTAAGACGACACCGCCGGCGAGGAAATCCGCCACTAAAACCGCCGGAGAATCCCCTGCGGCAAAGCGCACGCCGGCCTCCAGAACAAGAAGCGTCAAGAAGATGGAAGCATCGCCCGCACCCGACCCGATCTCCGATTCCAATCCGAATCAATCTCAGGAGCAGAAATCATTAGCCAATGCTACCACTACGAAATCTGCAAAGAGGAAGACACCAGGGAGATCGCGAAGTAAAGCGGTTGCCACTCCTAATTTGGCTGAGCAACTGGAGGCAGCAGCTGATGAAACTCCAATTGTAGAGAAAGTGGAAGAACCTGGAGATGTTGAAGTTGTCAAAGCAGATAATATGGAGACTGAGAAAGAGGGGGCACAAGGTTTTGGGTCTGTTGGATTATCTGATGAGAAGGAACAAAAGTACATGGAAGTGGATGAACCTGCTGTTGAAAAAGTTTGTGAATCAGAAGAAAAGGGGAAGAACATAATGGAAATTGAAGTAACTGCTTCTCAGGATGCTTCTGATTCTTTAAAACGACCGGGCCGCACCATTGTGGACCTCAATATATCTGTGGCGGATAATGAAGATTCTACTGGGGCAAAGGAGGGAGGGGAAGAGTTGAAAGAGGAAGAGCTGAAAAAACAGGAGGGAGGGAAAGGAAATGAAGAGTTGATAGAACAAAAAGGAGAGGATGGAAAGGAAGAGTTTAACGAACAGGAAGGAGAGAAAGAAAAGGAAGAATCGAAAGAACAGGAAGGAGAGAAAGAAAAGGAAGAATCGAAAGAACAGGAAAGAGGAGAGAAAGGAAAGGAAGAATTGAAAGATCAGGAAGCAGAGCAAGACAAGGAAACGTTGAAAGAACCTGAAGGAGAGATAGAGAAGGAAGAGTTGAAACAACAAAAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAACACGAAGGAGAGAAAGGCAAGGAAGAGTTTAAAGGAGAGGAGCTAGAAAAAGAAAAGGGAGAGGAAACAAACATTATTCAACATGAAGAGCACTCTAACATTGAGCCTTTTAATGTAGAAGTAAAAGCCCAGTTTCAAGAAGATGTTAATCCTGAAAAATATGGTGATGAAGGGCCAAAGAGTGGTGAAATGTTAGATCTTGGAGAACAAGGGAGGGAGGAGCTTGTTGAGGAAGATCCGGAGGAACCTCCAGAAGAAACCGAGACATTGGAGGAGGAGCATATGGAATTGGAAGCAATTGCAAAGCAGAGAAAGATTAAGAAAGAACATGAGATATTTGTTGGTGGACTGGATAGAGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGGTAGTTGAAGTCAGATTGCATAAAAACTCCTCAACAAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCTAGTAAAGAACATGCAAAGAGAGCTTTGTCTGAAATGAAGAACCCTGTTATAAATGGAAAACGATGTGGCACTGCTCCTAGTGAAGATAATGACACACTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGATGGGGTTGAAAACATTACACTTGTCCCAGATGTTCAACATGAAGGCTTGAGTCGGGGCTTTGCGTTCCTTGAATTCTCTTGTCATGCTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCATTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATCAATGGTCTCCCTCCTCATTGGGAGGAAGATCATGTCAGGGAGCTGTTTAAATCTTACGGTGAAATAGTAAGAATAGTTTTAGCCCGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGGACATCAAAGATAAAAGTGAGAGCTAGGCTCTCAAATCCGTTGCCTAAAATGCAGGCTGTCAAGGGTGGCATGTGTGGTGGCTTCCGAATTGGTCATGCTAGGAGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAACCCTTCAATAACTGGGGAAATTTCAACAGGGACAGGAGTTTACATCGTGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGACGACCTTGATTTTAATATGAATCCAGATTTTCGTCAGAGACAATTTGGTCCACAAGGAGCTACGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCAAGACATTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGAAGGCCCTACTCCCCAGGTGGACAGTATGACACACCTTTCATGGGAAGGCATTTTGATGATCCGTATCTATATGATGATAATATGCATGGGATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTCAAAGATTTCGACCCCGTTTGGATTATGCAGATCCATCTATGTTTCATGGAACTCGTTACCATGATTCTTTTGGGGCCGGCAGCAGACAGTACCCTCATGACTATTATGGTTCTGATTCTGGTGGAGGTCCATATTCGTCTTACCATGGGGGCGATGGCTCACATGGGCATGGATACTATTATTAGTTGATATATAAAGAGGGAAATACTAACCTTCTCTCCTCACCTGAAGGAGAGAAGAGGAGGTCAGCAGCATCATTCAGTCTTTTTGGACAAATGCGTTATTTTTTGTCTTGTCCTATTCAACTTAAATGGTGTGTTAGACTGGCTAACGATGACAGCTTTGCTAAATTTGAGCCATGA | 2964 | 0.4396 | MRTRNADSSSKSATPKTTPPARKSATKTAGESPAAKRTPASRTRSVKKMEASPAPDPISDSNPNQSQEQKSLANATTTKSAKRKTPGRSRSKAVATPNLAEQLEAAADETPIVEKVEEPGDVEVVKADNMETEKEGAQGFGSVGLSDEKEQKYMEVDEPAVEKVCESEEKGKNIMEIEVTASQDASDSLKRPGRTIVDLNISVADNEDSTGAKEGGEELKEEELKKQEGGKGNEELIEQKGEDGKEEFNEQEGEKEKEESKEQEGEKEKEESKEQERGEKGKEELKDQEAEQDKETLKEPEGEIEKEELKQQKGEKGKEELKEHEGEKGKEEFKGEELEKEKGEETNIIQHEEHSNIEPFNVEVKAQFQEDVNPEKYGDEGPKSGEMLDLGEQGREELVEEDPEEPPEETETLEEEHMELEAIAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFASKEHAKRALSEMKNPVINGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWEEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGTSKIKVRARLSNPLPKMQAVKGGMCGGFRIGHARSGAFPRSGRGFGRGRQPFNNWGNFNRDRSLHRGGHSQIGRMGFRDDLDFNMNPDFRQRQFGPQGATRGGHYAGSRGAAFAGPSRHYHDRAWYGIPDGGPSEPIPPRRPYSPGGQYDTPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPQRFRPRLDYADPSMFHGTRYHDSFGAGSRQYPHDYYGSDSGGGPYSSYHGGDGSHGHGYYY*LIYKEGNTNLLSSPEGEKRRSAASFSLFGQMRYFLSCPIQLKWCVRLANDDSFAKFEP* | 988 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 210 | 359 | - | - | |
Rops2g03279 | 986 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 513 | 597 | - | - | |
Rops2g03279 | 986 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 435 | 503 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 613 | 679 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 515 | 583 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 395 | 414 | - | - | |
Rops2g03279 | 986 | Gene3D | - | 386 | 507 | IPR012677 | - | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 6 | 25 | - | - | |
Rops2g03279 | 986 | SUPERFAMILY | RNA-binding domain, RBD | 434 | 578 | IPR035979 | GO:0003676 | |
Rops2g03279 | 986 | Gene3D | - | 512 | 597 | IPR012677 | - | |
Rops2g03279 | 986 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 611 | 691 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 67 | 928 | - | - | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 148 | 175 | - | - | |
Rops2g03279 | 986 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 433 | 511 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | CDD | RRM_SF | 613 | 687 | - | - | |
Rops2g03279 | 986 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 388 | 507 | - | - | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 369 | 394 | - | - | |
Rops2g03279 | 986 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 513 | 598 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | CDD | RRM_SF | 515 | 578 | - | - | |
Rops2g03279 | 986 | SUPERFAMILY | RNA-binding domain, RBD | 602 | 716 | IPR035979 | GO:0003676 | |
Rops2g03279 | 986 | Gene3D | - | 600 | 754 | IPR012677 | - | |
Rops2g03279 | 986 | CDD | RRM_SF | 435 | 504 | - | - | |
Rops2g03279 | 986 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 598 | 749 | - | - | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 108 | 133 | - | - | |
Rops2g03279 | 986 | SMART | rrm1_1 | 434 | 507 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | SMART | rrm1_1 | 612 | 687 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | SMART | rrm1_1 | 514 | 591 | IPR000504 | GO:0003723 | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 57 | 82 | - | - | |
Rops2g03279 | 986 | Coils | Coil | 321 | 341 | - | - | |
Rops2g03279 | 986 | Coils | Coil | 248 | 275 | - | - | |
Rops2g03279 | 986 | MobiDBLite | consensus disorder prediction | 1 | 414 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g03279 | Rops-Chr2 | 59965317 | 59974190 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g03279 | 435 | 679 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.810 | 1.96e-16 | 82.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g03279 | - | - | gmx:100784338 | 1176.77 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g03279 | 2 | 59965317 | 59974190 | Rops2g03279 | 2 | 59965317 | 59974190 | ECH |