Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03279 ATGAGAACTCGGAATGCCGATTCCTCCTCCAAATCCGCAACCCCTAAGACGACACCGCCGGCGAGGAAATCCGCCACTAAAACCGCCGGAGAATCCCCTGCGGCAAAGCGCACGCCGGCCTCCAGAACAAGAAGCGTCAAGAAGATGGAAGCATCGCCCGCACCCGACCCGATCTCCGATTCCAATCCGAATCAATCTCAGGAGCAGAAATCATTAGCCAATGCTACCACTACGAAATCTGCAAAGAGGAAGACACCAGGGAGATCGCGAAGTAAAGCGGTTGCCACTCCTAATTTGGCTGAGCAACTGGAGGCAGCAGCTGATGAAACTCCAATTGTAGAGAAAGTGGAAGAACCTGGAGATGTTGAAGTTGTCAAAGCAGATAATATGGAGACTGAGAAAGAGGGGGCACAAGGTTTTGGGTCTGTTGGATTATCTGATGAGAAGGAACAAAAGTACATGGAAGTGGATGAACCTGCTGTTGAAAAAGTTTGTGAATCAGAAGAAAAGGGGAAGAACATAATGGAAATTGAAGTAACTGCTTCTCAGGATGCTTCTGATTCTTTAAAACGACCGGGCCGCACCATTGTGGACCTCAATATATCTGTGGCGGATAATGAAGATTCTACTGGGGCAAAGGAGGGAGGGGAAGAGTTGAAAGAGGAAGAGCTGAAAAAACAGGAGGGAGGGAAAGGAAATGAAGAGTTGATAGAACAAAAAGGAGAGGATGGAAAGGAAGAGTTTAACGAACAGGAAGGAGAGAAAGAAAAGGAAGAATCGAAAGAACAGGAAGGAGAGAAAGAAAAGGAAGAATCGAAAGAACAGGAAAGAGGAGAGAAAGGAAAGGAAGAATTGAAAGATCAGGAAGCAGAGCAAGACAAGGAAACGTTGAAAGAACCTGAAGGAGAGATAGAGAAGGAAGAGTTGAAACAACAAAAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAACACGAAGGAGAGAAAGGCAAGGAAGAGTTTAAAGGAGAGGAGCTAGAAAAAGAAAAGGGAGAGGAAACAAACATTATTCAACATGAAGAGCACTCTAACATTGAGCCTTTTAATGTAGAAGTAAAAGCCCAGTTTCAAGAAGATGTTAATCCTGAAAAATATGGTGATGAAGGGCCAAAGAGTGGTGAAATGTTAGATCTTGGAGAACAAGGGAGGGAGGAGCTTGTTGAGGAAGATCCGGAGGAACCTCCAGAAGAAACCGAGACATTGGAGGAGGAGCATATGGAATTGGAAGCAATTGCAAAGCAGAGAAAGATTAAGAAAGAACATGAGATATTTGTTGGTGGACTGGATAGAGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGGTAGTTGAAGTCAGATTGCATAAAAACTCCTCAACAAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCTAGTAAAGAACATGCAAAGAGAGCTTTGTCTGAAATGAAGAACCCTGTTATAAATGGAAAACGATGTGGCACTGCTCCTAGTGAAGATAATGACACACTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGATGGGGTTGAAAACATTACACTTGTCCCAGATGTTCAACATGAAGGCTTGAGTCGGGGCTTTGCGTTCCTTGAATTCTCTTGTCATGCTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCATTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATCAATGGTCTCCCTCCTCATTGGGAGGAAGATCATGTCAGGGAGCTGTTTAAATCTTACGGTGAAATAGTAAGAATAGTTTTAGCCCGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGGACATCAAAGATAAAAGTGAGAGCTAGGCTCTCAAATCCGTTGCCTAAAATGCAGGCTGTCAAGGGTGGCATGTGTGGTGGCTTCCGAATTGGTCATGCTAGGAGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAACCCTTCAATAACTGGGGAAATTTCAACAGGGACAGGAGTTTACATCGTGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGACGACCTTGATTTTAATATGAATCCAGATTTTCGTCAGAGACAATTTGGTCCACAAGGAGCTACGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCAAGACATTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGAAGGCCCTACTCCCCAGGTGGACAGTATGACACACCTTTCATGGGAAGGCATTTTGATGATCCGTATCTATATGATGATAATATGCATGGGATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTCAAAGATTTCGACCCCGTTTGGATTATGCAGATCCATCTATGTTTCATGGAACTCGTTACCATGATTCTTTTGGGGCCGGCAGCAGACAGTACCCTCATGACTATTATGGTTCTGATTCTGGTGGAGGTCCATATTCGTCTTACCATGGGGGCGATGGCTCACATGGGCATGGATACTATTATTAGTTGATATATAAAGAGGGAAATACTAACCTTCTCTCCTCACCTGAAGGAGAGAAGAGGAGGTCAGCAGCATCATTCAGTCTTTTTGGACAAATGCGTTATTTTTTGTCTTGTCCTATTCAACTTAAATGGTGTGTTAGACTGGCTAACGATGACAGCTTTGCTAAATTTGAGCCATGA 2964 0.4396 MRTRNADSSSKSATPKTTPPARKSATKTAGESPAAKRTPASRTRSVKKMEASPAPDPISDSNPNQSQEQKSLANATTTKSAKRKTPGRSRSKAVATPNLAEQLEAAADETPIVEKVEEPGDVEVVKADNMETEKEGAQGFGSVGLSDEKEQKYMEVDEPAVEKVCESEEKGKNIMEIEVTASQDASDSLKRPGRTIVDLNISVADNEDSTGAKEGGEELKEEELKKQEGGKGNEELIEQKGEDGKEEFNEQEGEKEKEESKEQEGEKEKEESKEQERGEKGKEELKDQEAEQDKETLKEPEGEIEKEELKQQKGEKGKEELKEHEGEKGKEEFKGEELEKEKGEETNIIQHEEHSNIEPFNVEVKAQFQEDVNPEKYGDEGPKSGEMLDLGEQGREELVEEDPEEPPEETETLEEEHMELEAIAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFASKEHAKRALSEMKNPVINGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWEEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGTSKIKVRARLSNPLPKMQAVKGGMCGGFRIGHARSGAFPRSGRGFGRGRQPFNNWGNFNRDRSLHRGGHSQIGRMGFRDDLDFNMNPDFRQRQFGPQGATRGGHYAGSRGAAFAGPSRHYHDRAWYGIPDGGPSEPIPPRRPYSPGGQYDTPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPQRFRPRLDYADPSMFHGTRYHDSFGAGSRQYPHDYYGSDSGGGPYSSYHGGDGSHGHGYYY*LIYKEGNTNLLSSPEGEKRRSAASFSLFGQMRYFLSCPIQLKWCVRLANDDSFAKFEP* 988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03279 986 MobiDBLite consensus disorder prediction 210 359 - -
Rops2g03279 986 FunFam Heterogeneous nuclear ribonucleoprotein Q 513 597 - -
Rops2g03279 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 435 503 IPR000504 GO:0003723
Rops2g03279 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 613 679 IPR000504 GO:0003723
Rops2g03279 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 583 IPR000504 GO:0003723
Rops2g03279 986 MobiDBLite consensus disorder prediction 395 414 - -
Rops2g03279 986 Gene3D - 386 507 IPR012677 -
Rops2g03279 986 MobiDBLite consensus disorder prediction 6 25 - -
Rops2g03279 986 SUPERFAMILY RNA-binding domain, RBD 434 578 IPR035979 GO:0003676
Rops2g03279 986 Gene3D - 512 597 IPR012677 -
Rops2g03279 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 611 691 IPR000504 GO:0003723
Rops2g03279 986 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 67 928 - -
Rops2g03279 986 MobiDBLite consensus disorder prediction 148 175 - -
Rops2g03279 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 433 511 IPR000504 GO:0003723
Rops2g03279 986 CDD RRM_SF 613 687 - -
Rops2g03279 986 FunFam Heterogeneous nuclear ribonucleoprotein Q 388 507 - -
Rops2g03279 986 MobiDBLite consensus disorder prediction 369 394 - -
Rops2g03279 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 598 IPR000504 GO:0003723
Rops2g03279 986 CDD RRM_SF 515 578 - -
Rops2g03279 986 SUPERFAMILY RNA-binding domain, RBD 602 716 IPR035979 GO:0003676
Rops2g03279 986 Gene3D - 600 754 IPR012677 -
Rops2g03279 986 CDD RRM_SF 435 504 - -
Rops2g03279 986 FunFam Heterogeneous nuclear ribonucleoprotein Q 598 749 - -
Rops2g03279 986 MobiDBLite consensus disorder prediction 108 133 - -
Rops2g03279 986 SMART rrm1_1 434 507 IPR000504 GO:0003723
Rops2g03279 986 SMART rrm1_1 612 687 IPR000504 GO:0003723
Rops2g03279 986 SMART rrm1_1 514 591 IPR000504 GO:0003723
Rops2g03279 986 MobiDBLite consensus disorder prediction 57 82 - -
Rops2g03279 986 Coils Coil 321 341 - -
Rops2g03279 986 Coils Coil 248 275 - -
Rops2g03279 986 MobiDBLite consensus disorder prediction 1 414 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops2g03279 Rops-Chr2 59965317 59974190 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03279 435 679 Eukaryotic Initiation Factors Gene Family AT2G23350 23.810 1.96e-16 82.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03279 - - gmx:100784338 1176.77
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03279 2 59965317 59974190 Rops2g03279 2 59965317 59974190 ECH