Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03276 ATGAAGCGGGCAAGGAAATTTAACAGGGTTTCGTGGGCTCCTGGAGTTAATCTGTGTCAGATAAAATTGTTCTTGCCTGAGGATCACCCCTCAAAAGTTGGTCAGAAATCACAAGATCACCTTCAAGCAAAGACTACATCAATGTTACATTCTAGTACTATTGAATCTAATGATTTACCCCCTGGGTTTGAAAGCAGTCATTTCCTGAACCAATCGAAGGTTGAATTCTCCCACATTTCCCAGATAAAATGGGAATGCCCTCCCCGGTTTATTTTCAGTTCTCAGTGGCGTGTTGCAGCTGGTGAAGAAAGTAAGGAGAAAGAGCATCAGAAACTGAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACATTACTCCTCTCATCCCTATCATTCCCATTGAGGAGGAAGAATGTATGGATATTTTGCCTGAATGTGCAGCAGCAGTAAACCCTCCCTCCAATGTGCAGTCACAGAACCTGCAGCAACATATATCAGCCAAAACTCCCATTAGTTCAGACTGTAATACCTCCCATAATGTTTCCTCTGATGCCTGTGTGATGATGCCCTTAGCTGGGGCATCTGCTGGTTCGGAAGCAGACTTAATAGCAGCCTCTGCTGTTGTAGCAGCCATCATGAAGAATAATGAGCAAGGAAGCTTAATTGATATGGATCTCCTCGTTAAAATATTTAATGACCCTAAAATGATTGAGAAATTGATTAATGAACATAGAAGTGCATCCTCAAATACTGTGGCTGTACCCACTTCTGGACTGAAACCTACTATTCCATCATGTCTGTTGTCTACATCTACACCTGATGTGGCAGCTTCTGGGATTACACTCTCAAGTACGTTGAAGCCTGCAACTCCATCAGTTTCATTGTTGAATCCTACACCTGATAAGCCAGCAACTCTGTCGGCTCCTGCAATTCCATCAGTTTCAATGGTGACTTCTGCTCACGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCTCTCTGTTGTAAACCAGTATCTCCCTCGGTTTTGCTGCCTACACCTACACCTGCATCTGCACCTCATATGCTCAGGTCTGTCAACAAAAATATTCACCATATGTCAAATGGAATGCCAGCTGCTTTAAATACCCAACCTCAGCAAGATACACTTATAGCATCCGGGTTGAAGCGAGCTGCATCACTGGCTTCCTTTTCTTCTAGTGAATTATGTTCTGTTCCATTGCCTTCTGCTACTAGGAACTTGCATACAGTTGTGAATCAGGCGCAAACCACTGGTAGTACAATGCCTTATCAACTAAGGACAGGTTCAGCATGTGCTATAAAGGATGCCAACTATTATAAAAACCTCGTTAGGCAACATGGTGCAGATAAGCAAGATAAGCAGGACTCACAAATAGGTATTCCTCATAGTAACTTCCAAGATTTGAAATTGGTACCTAACATTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGTAATGGTTCTAATTGCCCCTATCAGCATGATGTGTCAGATCAGTGGGGAACTGGTATAGGGGCCCAGAATGCAAAAAGAATGAAGTTAGGGTCAGAAATTTAG 1686 0.4282 MKRARKFNRVSWAPGVNLCQIKLFLPEDHPSKVGQKSQDHLQAKTTSMLHSSTIESNDLPPGFESSHFLNQSKVEFSHISQIKWECPPRFIFSSQWRVAAGEESKEKEHQKLREMRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDNITPLIPIIPIEEEECMDILPECAAAVNPPSNVQSQNLQQHISAKTPISSDCNTSHNVSSDACVMMPLAGASAGSEADLIAASAVVAAIMKNNEQGSLIDMDLLVKIFNDPKMIEKLINEHRSASSNTVAVPTSGLKPTIPSCLLSTSTPDVAASGITLSSTLKPATPSVSLLNPTPDKPATLSAPAIPSVSMVTSAHDKPATASVPLSRPLCCKPVSPSVLLPTPTPASAPHMLRSVNKNIHHMSNGMPAALNTQPQQDTLIASGLKRAASLASFSSSELCSVPLPSATRNLHTVVNQAQTTGSTMPYQLRTGSACAIKDANYYKNLVRQHGADKQDKQDSQIGIPHSNFQDLKLVPNIKQGEVKHKIQKPCIYFKSSRGCRNGSNCPYQHDVSDQWGTGIGAQNAKRMKLGSEI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03276 561 ProSiteProfiles Zinc finger C3H1-type profile. 513 540 IPR000571 GO:0046872
Rops2g03276 561 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03276 Rops-Chr2 59921187 59929429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03276 81 152 Homeobox Transcription Factor Family AT4G02560 45.833 3.26e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g03276 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03276 - - gmx:102661587 737.258