Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03275 ATGAAGCGAGCAAGGAAATCCAACAAGCTCTCATGGGCTAGTAATCTGTATCAGACAAAATCTTTCACGCCGGATAATTTCCCCTCAAAAGTTAGTCAGAAATTGCAAGATCATCTTCAAGCAAAGACGTCATCATTGTTACATTCTAGCACCAATGAATCTAATGATTTACCTCCTGGGTTTGAAAGTAGTCATTTCCTGAACCAAAGGAAGGTTGAATTCTCCTGCATTTCTCAGATAAAATGGGAATGCCCTCCCCGGTTTGTGTTCAGTTCTCATTGGAGTGTTGCAGCTGGTGAAGAAAGTAAGGAGAAAGAGCATCAGAAACAAAGAGAAATGAGAGTGCTTGAAGCATTTTATCCTCGTATTTCTGCCATTCCTACTAGCCCTTCTGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACAATACTCCTCGCATCCCTCTCATTCCCATTGAGGAGGAAGAATCTATGGATATTATGCCAGAATCTACAGCAGCAATGAACCCTCCTCCCAATGTGCAGTCCTCAGACGCATATGCAATGCCCTTTTCTTGGGTATCTCCTGGTTCAGATGCAGACTTAGCCTCTGTGGTCGTCGCAGCCATCTTGAAGAGTAATGAGCAAGGAAGCTTAGTTGATATGGATCTGCTTTATAAAATATTTAATGACCCAAAAATGATTGAGAATATGATTGATGTACTTAGAAGAATTATAGCCAACACTGCAAGTGCATCCTCCAATACTGTGGATGTATCCACTCCAGGATTGAAACCTGATGTGACAGCTTCTGGGATTACACTCTCAAGTACAGTGAAGTCTGCAATTCCATCGGTTTCAATGGTGACTTCTACACATGATAAGCTAGCAACTGCATCAGTTACATTGTCTAGGACTGTCTCTGGCAAACCAGTATCTCCTTCAGTTTTGCTGCGTACACCTACTCCTACACCTACACCGCATATATCGATTGGAATGCCAATTGCCTTAGATCCAGTTCTGGCATCTGGGATGAAGGCAAGGACAGGTTCGGAATGTGCTATAAAGAATGCCAACTATTATAAAAAACTCATCAGGCAACATGGTGTAGATAAGCAGGACTCACGAATGGGTATCCGTCACAGTAGTAAACAAGGAGAAGTGAAACACAAAGTCCAAAAACCATGCAGATACTTTGAAAGCTCAAAGGGGTGCCGTAATGGTTCTAATTGCCCCTATCTGCATAATGTTTCAGTTCAGTTGGGAGCTTGTATAAGGGCCCGGAATGCCAAAAAGTTGAAATTATAG 1293 0.42 MKRARKSNKLSWASNLYQTKSFTPDNFPSKVSQKLQDHLQAKTSSLLHSSTNESNDLPPGFESSHFLNQRKVEFSCISQIKWECPPRFVFSSHWSVAAGEESKEKEHQKQREMRVLEAFYPRISAIPTSPSVSLDVEEEDYDDNNTPRIPLIPIEEEESMDIMPESTAAMNPPPNVQSSDAYAMPFSWVSPGSDADLASVVVAAILKSNEQGSLVDMDLLYKIFNDPKMIENMIDVLRRIIANTASASSNTVDVSTPGLKPDVTASGITLSSTVKSAIPSVSMVTSTHDKLATASVTLSRTVSGKPVSPSVLLRTPTPTPTPHISIGMPIALDPVLASGMKARTGSECAIKNANYYKKLIRQHGVDKQDSRMGIRHSSKQGEVKHKVQKPCRYFESSKGCRNGSNCPYLHNVSVQLGACIRARNAKKLKL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03275 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 429 - -
Rops2g03275 430 MobiDBLite consensus disorder prediction 19 59 - -
Rops2g03275 430 ProSiteProfiles Zinc finger C3H1-type profile. 386 413 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03275 Rops-Chr2 59903882 59906221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03275 79 150 Homeobox Transcription Factor Family AT4G02560 43.056 2.76e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g03275 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03275 - - gmx:100783272 456.832