Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03256 ATGGCTTTGCCAGCATCCTCCTATTCCTTCACCTACGATGTATTCCTCAGCTTCAGAGGCGAAGATACTCGCTATGGTTTCACTGGCAATCTCTACAAAGCTCTTTCTGACAGGGGAATCCACACCTTCATTGATGATGAGGAGCTTCAGAGAGGGCACGAAATCACACCTTCACTTCTAAAGGCAATTGAAGAGGACGTGGATCCTTCTGATGTGCGAAAGCAGACAGGGGCTTATGGAGAAGCATTGGCTGTGCATAAGGAGAGGTTCAATGATAACATGGAGAGGTTGCAGAAATGGAGGACAGCTCTGCAGCAAGGTACTAGTGCAATCGAAATCATAAATATTTGGACCCCCTTTTATGAAGAAGTGATAGAATTGGATGACTTGGCCTTCAAGAAGATGAAAAACCTTAAAACACTTATGATTAGAAGTGGTCTTTTTTCCAAAGGTCCCAAACATCTTCCAAATAGTTTAAGAGTACTGGAATGGTGGAGATATCCTTCACAGGATTTACCATATGATTTTCATCCAAAGGAACTTGCCATATTCAATTTACCCCAAAGTTGCTTGACATCATTCAAGTTGGCTAACTCATCAAAGAAGTTCGTGAATATGAGAGTTTTGAATTTAGATGAGGCAGAATGTTTAACACAGATACATGATGTATCTTCCCTACCAAATTTAGAGGATTTTTCATTTGTAAATTGTGAGAATTTAATTACAATTCACGAGTCGGTTGGGTTCCTGAATAAACTTAAATTCTTGTGTGCTTCAGGTTGTAGTAAGCTTAAGAGTTTTCCACCTATCAAGTTGATCTCCCTTGAAGAACTCGATCTTTCATTTTGCTCAAGTCTCCAGGGTTTTCCAGAAATATTAGGAAGGATGGAAAATATAACAGAACTTGTGTTGGAAGGGACTCCTATAAAAGAATTGCCATTTTCATTTCATAATCTTACTTGTCTTCGAACATTAGAGTTGAGTTGCCATGGGATGTTAAGGTTACCGAGTAGCATTGTCATGATGCGAGAACTGGTTGAGATTTATGGTTGTCACTGGAAATGTGAAGGGTGGTTGTTGCCCAAACAGGACAAGGGTGAACAAAAAGTGAGCTCAGTGGTGTCTTCAAACATAGAATATATTCATCTCTCAAACAACAACCTTTCAGATGAATTTTTAAGGATAGGTCTCACATGGTTTGTTCATGTGAAAGAATTATCCCTACGACATAATAATTTCACAATTCTTCCGGAATGCATCAAAGAATGTCGCTTTTTGAGGAAACTTTATTTAGATTATTGTCAGTATCTTCGAGAAGTTAAAGGGATTGCGCCAAACTTGGAAATATTTTCTGCAGGAGGATGCAAATCTTTGACTTGTACAAACATGTTATTGAATCAGGAATTGCATGAAGCTGGAAACACCATGTTTTATTTGCCAGGAGCAAAAATTCCAGATTGGTTCGAGCACCGTAGTAAGGGAGGGTCAATTTCTTTTTGGTTTCGTAACAAGTTCCCAGCTATAGCTCTATGTCTTGTTACTACACTGATGTTTATCGACTCTTCAATTATACTTATCGTGACCATCAATGGCAAAAGTCGTCTCTTTGACTATTTGCCCATGAACCCGGATCATACATATATTTTTGATTTGCAAACAATCAAATTCCAAAATAATTTGGATGAGGCACTTATAGAAAATGGATGGAACCATGCGGAGATTAAGTTCACGTTGAAGGAGATCCAACTCCCGATAGAAAGTGGAATCCATGTATTCAAACAGAAGAGTAGCATGGAGGATATTCAATTCACTAATCCTTATAGGAAGAGAAAATTGGATGGTGATCTCAATAGTTTAAATATCACAAAATCATGTCAAAGGTAA 1884 0.3832 MALPASSYSFTYDVFLSFRGEDTRYGFTGNLYKALSDRGIHTFIDDEELQRGHEITPSLLKAIEEDVDPSDVRKQTGAYGEALAVHKERFNDNMERLQKWRTALQQGTSAIEIINIWTPFYEEVIELDDLAFKKMKNLKTLMIRSGLFSKGPKHLPNSLRVLEWWRYPSQDLPYDFHPKELAIFNLPQSCLTSFKLANSSKKFVNMRVLNLDEAECLTQIHDVSSLPNLEDFSFVNCENLITIHESVGFLNKLKFLCASGCSKLKSFPPIKLISLEELDLSFCSSLQGFPEILGRMENITELVLEGTPIKELPFSFHNLTCLRTLELSCHGMLRLPSSIVMMRELVEIYGCHWKCEGWLLPKQDKGEQKVSSVVSSNIEYIHLSNNNLSDEFLRIGLTWFVHVKELSLRHNNFTILPECIKECRFLRKLYLDYCQYLREVKGIAPNLEIFSAGGCKSLTCTNMLLNQELHEAGNTMFYLPGAKIPDWFEHRSKGGSISFWFRNKFPAIALCLVTTLMFIDSSIILIVTINGKSRLFDYLPMNPDHTYIFDLQTIKFQNNLDEALIENGWNHAEIKFTLKEIQLPIESGIHVFKQKSSMEDIQFTNPYRKRKLDGDLNSLNITKSCQR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03256 627 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 122 349 IPR044974 GO:0006952
Rops2g03256 627 Pfam TIR domain 12 65 IPR000157 GO:0007165
Rops2g03256 627 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 106 IPR035897 -
Rops2g03256 627 Gene3D Ribonuclease Inhibitor 125 284 IPR032675 -
Rops2g03256 627 Pfam C-JID domain 479 578 IPR045344 -
Rops2g03256 627 SUPERFAMILY L domain-like 128 463 - -
Rops2g03256 627 Gene3D Ribonuclease Inhibitor 285 472 IPR032675 -
Rops2g03256 627 ProSiteProfiles TIR domain profile. 10 172 IPR000157 GO:0007165
Rops2g03256 627 SMART till_3 11 110 IPR000157 GO:0007165
Rops2g03256 627 Gene3D - 5 65 IPR035897 -
Rops2g03256 627 Gene3D - 66 124 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03256 Rops-Chr2 59513541 59522453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03256 107 351 WRKY Transcription Factor Family AT4G12020 35.361 8.02e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03256 - - gmx:100780257 579.711