Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03249 ATGGCTGAAGAGAGATTCACTGGAGTGGTTCAATGGTTCAACAATGGCAAAGGCTTTGGCTTCATCAAACCTGATGATGGAGGTGAAGATCTTTTCGTTCACCAATCTTCAATCAGATCTGACGGTTACCGCACTCTTCTAGAAGGTGATCGCGTCGAGTTCGCCATCGCCACTGGCGACAACGATAAGACGAAAGCCGTTGATGTTACCGGAATCAACGGCGCTCCGTTGCAGTCCAGGAAGGACAACTTCGGCGGAGGTCGCGGCGGAAGAGGCGGCGACAGGCGCAACGGTGGTGGAGGAGCGGCGGGTGCTGGTTGTTACCAGTGCGGTGATTTAGGGCATTTGGCTAGGGATTGCACCCAGAGCAATAATTCCGGCGGCGGCGACGGCGGTGGTGGTGGAGCTTGTTTCAGTTGCGGCGGATTTGGACACCTTGCTAGGGATTGCATGCGTGGAAGCAATGGCGGCGGTGGTGGCGGAGCGTCTTGCTTTAGGTGTGGTGGGTACGGGCACATGGCAAGAGACTGCGCCACCGGCAAGGGTGGAAGTGGTGGCGCCGGTAACGGAGGTTGTTTTCGATGTGGAGAAGTCGGTCACTTGGCTAGGGATTGCGGCGTTGAAGGTGGAAGGTTTGGCGGTGGCAATGGTGGGAATAGCAACAGGTGCTTCAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAAGCCTCTGGGTGA 726 0.5647 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGINGAPLQSRKDNFGGGRGGRGGDRRNGGGGAAGAGCYQCGDLGHLARDCTQSNNSGGGDGGGGGACFSCGGFGHLARDCMRGSNGGGGGGASCFRCGGYGHMARDCATGKGGSGGAGNGGCFRCGEVGHLARDCGVEGGRFGGGNGGNSNRCFNCGKPGHFARECVEASG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03249 241 ProSiteProfiles Zinc finger CCHC-type profile. 107 122 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Gene3D - 1 83 IPR012340 -
Rops2g03249 241 ProSiteProfiles Zinc finger CCHC-type profile. 164 177 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Gene3D - 187 211 - -
Rops2g03249 241 Gene3D - 214 241 - -
Rops2g03249 241 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Rops2g03249 241 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Rops2g03249 241 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Rops2g03249 241 Gene3D - 86 133 - -
Rops2g03249 241 Gene3D - 134 186 - -
Rops2g03249 241 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Rops2g03249 241 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Rops2g03249 241 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SUPERFAMILY Retrovirus zinc finger-like domains 97 153 IPR036875 GO:0003676|GO:0008270
Rops2g03249 241 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Rops2g03249 241 Pfam Zinc knuckle 191 205 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Pfam Zinc knuckle 106 122 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Pfam Zinc knuckle 222 236 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 Pfam Zinc knuckle 164 178 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Rops2g03249 241 SUPERFAMILY Retrovirus zinc finger-like domains 153 206 IPR036875 GO:0003676|GO:0008270
Rops2g03249 241 MobiDBLite consensus disorder prediction 77 97 - -
Rops2g03249 241 SUPERFAMILY Retrovirus zinc finger-like domains 211 237 IPR036875 GO:0003676|GO:0008270
Rops2g03249 241 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Rops2g03249 241 ProSiteProfiles Zinc finger CCHC-type profile. 192 205 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SMART csp_8 7 72 IPR011129 GO:0003676
Rops2g03249 241 ProSiteProfiles Zinc finger CCHC-type profile. 222 236 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 238 - -
Rops2g03249 241 SMART c2hcfinal6 222 238 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Rops2g03249 241 SMART c2hcfinal6 191 207 IPR001878 GO:0003676|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Rops2g03249 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03249 K09250 - gmx:100806783 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03249 2 59405796 59406773 Rops2g03249 2 59405796 59406773 ECH