Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03235 ATGCCAAGTGGCAGAAGAATTTTCCACAGCGATGTGGAAAAAGAAGAATTTCAATATGCCAGTACTCAATGTCTCTCATCGTACTATAGTGTCTTTATGGTTCGCCTTGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTGCTAACTTTCTTGACATGGCATTTCACAAAGATTTATACATCAAAGTCTATTAATAGTTTGGCATATGACCTGCGTTATGAACTTCTACAACGTCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACAGCTCAGGTCAAGTTGTCTCAGTATGTGATCAGAAGCCATAGCAACCTTGCCACTCAAGAACAGCAAGTTGAGATGTATGAAGCAATGAGGGCTGTAACATGGGCACTGTTTGCTAGTCGAAAAGCTCTCCACTCAATAACTGTGAAATATAAGAACGGATTTGTCCAAGCATTCCATAGAGATTTGAATGATAATAATACTTTTTACATTTACTCTGATCTTGCAAATTACTCCATGGTTGCTAGAGGCTATAATGAGGTCAATTCATTTGCAACACATGAAGTTTGGAATGATAAAGACATTCATGGTAACAAGTCTGCAATTTGGTATCGTGAACCACTTGATCCTGTTAGTGGTGAAAAGATTGGAAAAGCTATGCAAATAGCACCAGAAGACTCAATTAATGTAGCTGGGTTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGGGAAAGTTTACAGATTCACCTTTGCTTTCTGCAGCATTACCAGTTTGGGACTCTTCTAATAAGAGTATTGTTGCTGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGTTAATGAAAGAACTAGTTGAGTTGCATAGTGGTCATATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGACCCTCTACTCACAAATTCAACAAAGCCACCTAAGCTTAAGATGGCTGTTGATTGTGAAAATGAAGTAATAAGAGAGGGAGCTCGGAGGCTACAGAAAACATATGGGAACAAGTTCCCTCCAAGTCATGAGGTTCATGTAGAGAATGCAAGGCTAGGCCACCAACAATATTACATTGACTCATTCTTCCTAAACTTGAAAAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCACTTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCCAATATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATCGGGTTACTTGATATTCTTATATCTGATGACCATCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCACTGCTCCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCACAGTTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGCTAGTTCGAGGTGATTCTGCTAGGGTGGTTCAAATTTTTGCAAATTTGATCAATAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAACTCTTGCAGTGATTATGCAAATTTTCCTCTAGAGCAGAAGAAATCAGTGTGTTCACAAAAGAGCAGAACGAAGCAACACGAAAATCATGCAAAGAGGACTTCTAATAGTGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACGGGCTGTGGTATTGACCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGAGCCCAGGAACACTGATGCGATTATACCTGCGTCTCAATGCACCTGTGGATGCCACGGAGCAACATTGTCAAGTAGATCTTGCTAACAAAGGCTTAGTGGTACTGCTGGCACTACATGGCAACATGGGCAGATTAATTACATCCAAGTGGTTACAAAAAAATGGGGTGGTTACTATGGAGGCATCTGAATGGAATGAATTAACACAAATTCTGAGGGAACTCTTTCATAAAAGAAGTTCAGCCCATAATAATGGCTTCGATGCACGCTATCCGGTACATGGGAATTTGAAGTCTAAATTAGTGAGTATACAAGAATTGACCAACCCAATATTTGTCATTGCTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGGACAGCTTAACTTCCTTCACAAGTACTATGGCAGAGCAAAATTTGTTTGGGTACTAAACCATGACTCTTCCAATGCCATAAAGATGGAGCTTCGCAGGAAAGGACATATACTAACAGTCAACAAACCCCTTTACAAAACAAAGATGATTCATATTTTGGAAACTGTCATAAAGGAGAGAAATGTTGAGCTACAAAAGAAAATTAGGACTACTCCAAGCACCATAATGAAAGAGGGTGATTTGCATGAGAGTCTTGAGATGGATTATATTCATTGTGATGTTGCAAGCTCTGATGATTCTGACATATCTGAAATGGGTGGTTCTAATCCTGTTATTGCAAATGGAGATAGACAAAGAGAAGAGGTAGTTAGATCCCATCCATTATCACAATACCAGATAAATAACTGCTTAGTAGGATTAACTCATGAATATATAGAACATCAAGCTCCTAAGAAGGAAGGGTCATGTCAGAGCAGCCTCAATTGCCAGGATGTCACTGCAAACGCCACACAAAAATCATCATCCGTTCAACAAGCATCCTTTCAAACAGGAGCTCAAGGTGAAGATTCTGAATGTGGTGAAACACGTAGGACCAGTAGCTCAAGTAGAGTAGTGAATGGAAAGAAATCTCTTGAAGGGCTGAGGATATTGCTTGCAGAAGATACGCCAGTAATTCAAAGGGTAGCAACCATAATGCTTGGAAGAATGGGAGCCACTGTTGCTGCCGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATAGCACACTTGGTATTGAAGATTGTAGAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGCTCATCTCAAACTGAGATTCTAAGTTGCCCTCCATATGACTTGATCCTAATGGATTGCCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACTGGGTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCTAAATGCCTGGGGGTGGGCATGGATGCTTATTTGACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACCAGAAGGACATCCTGA 3615 0.4055 MPSGRRIFHSDVEKEEFQYASTQCLSSYYSVFMVRLAIMVMLAILIGLLTFLTWHFTKIYTSKSINSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHSNLATQEQQVEMYEAMRAVTWALFASRKALHSITVKYKNGFVQAFHRDLNDNNTFYIYSDLANYSMVARGYNEVNSFATHEVWNDKDIHGNKSAIWYREPLDPVSGEKIGKAMQIAPEDSINVAGFSQVPDGVASWHVAVGKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNDPLLTNSTKPPKLKMAVDCENEVIREGARRLQKTYGNKFPPSHEVHVENARLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDHLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAQFDLGRELEGLVDMFSVQCINHSVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSDYANFPLEQKKSVCSQKSRTKQHENHAKRTSNSDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKESPGTLMRLYLRLNAPVDATEQHCQVDLANKGLVVLLALHGNMGRLITSKWLQKNGVVTMEASEWNELTQILRELFHKRSSAHNNGFDARYPVHGNLKSKLVSIQELTNPIFVIAVDIGLLDLSTDIWKGQLNFLHKYYGRAKFVWVLNHDSSNAIKMELRRKGHILTVNKPLYKTKMIHILETVIKERNVELQKKIRTTPSTIMKEGDLHESLEMDYIHCDVASSDDSDISEMGGSNPVIANGDRQREEVVRSHPLSQYQINNCLVGLTHEYIEHQAPKKEGSCQSSLNCQDVTANATQKSSSVQQASFQTGAQGEDSECGETRRTSSSSRVVNGKKSLEGLRILLAEDTPVIQRVATIMLGRMGATVAAVGDGQQAVDALNSTLGIEDCRRESLLKERNTSSSQTEILSCPPYDLILMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMDAYLTKPIDFKLMESTILSLTRRTS* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03235 1204 MobiDBLite consensus disorder prediction 1012 1044 - -
Rops2g03235 1204 CDD HisKA 461 522 IPR003661 GO:0000155|GO:0007165
Rops2g03235 1204 PRINTS Bacterial sensor protein C-terminal signature 650 664 IPR004358 GO:0016310|GO:0016772
Rops2g03235 1204 PRINTS Bacterial sensor protein C-terminal signature 668 678 IPR004358 GO:0016310|GO:0016772
Rops2g03235 1204 PRINTS Bacterial sensor protein C-terminal signature 685 703 IPR004358 GO:0016310|GO:0016772
Rops2g03235 1204 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 573 723 IPR003594 -
Rops2g03235 1204 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 447 527 IPR036097 GO:0000155|GO:0007165
Rops2g03235 1204 SUPERFAMILY CheY-like 1051 1202 IPR011006 -
Rops2g03235 1204 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 515 722 IPR036890 -
Rops2g03235 1204 Gene3D - 1033 1199 - -
Rops2g03235 1204 SMART HKATPase_4 573 725 IPR003594 -
Rops2g03235 1204 Gene3D - 528 726 IPR036890 -
Rops2g03235 1204 MobiDBLite consensus disorder prediction 1012 1028 - -
Rops2g03235 1204 Pfam His Kinase A (phospho-acceptor) domain 461 526 IPR003661 GO:0000155|GO:0007165
Rops2g03235 1204 PANTHER TWO-COMPONENT HISTIDINE KINASE 18 733 - -
Rops2g03235 1204 SMART HisKA_10 460 526 IPR003661 GO:0000155|GO:0007165
Rops2g03235 1204 FunFam Histidine kinase 1-like protein 448 527 - -
Rops2g03235 1204 ProSiteProfiles Response regulatory domain profile. 1054 1200 IPR001789 GO:0000160
Rops2g03235 1204 SMART REC_2 1053 1196 IPR001789 GO:0000160
Rops2g03235 1204 Pfam Response regulator receiver domain 1121 1193 IPR001789 GO:0000160
Rops2g03235 1204 CDD REC_hyHK_CKI1_RcsC-like 1055 1196 - -
Rops2g03235 1204 ProSiteProfiles Histidine kinase domain profile. 467 725 IPR005467 -
Rops2g03235 1204 Gene3D - 448 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03235 Rops-Chr2 59113790 59120639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03235 2 1204 Histidine Kinase Gene Family AT2G17820 63.576 0.0 1534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g03235 HATPase_c 8e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03235 - - gmx:100801970 2071.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03235 2 59113790 59120639 Rops2g03235 2 59113790 59120639 ECH