Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03211 ATGTTTGATAGTCACCGCAGTTTGTTGGAGGCTTCACCACCTGCAACAGCACAATCACCTTTGAAAAATAGAGGTGCATCTGCACATAATATGTTGCTAGGATTTATTGCAGGCATTTCAACAGTAATAGCAGTGGCCTTACTGTACTGTCTCTTCAGGAGAAAGGTTATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGGAAGGAATATGAAAATTTGAATTATGACAAAATACCATTAAGGCGTTTTGATTTTGAGGAACTTGAGAGGGCTACCAAAAATTTTAGCCTAGATTGCTTACTGGGTTCTGGTGCATTTGGAAATGTCTACAAGGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAAAGAGCTCATTCTGACTCATTCATAAGTGTGGAAGAATTCATAAATGAAGTTAGGCTCCTTTCAGCAGTAAAGCACAGGAATCTTGTTGGTCTGGTTGGATATTGTGAAGAACCAGAACGAGAAGGAGCCAAAATACTGGTCTATGAATATGTACCAAATGGTTCACTCCTTGAGTACATGATGGGAAACAGAAAGAGGAGCTTAACTTGGAGGCAAAGAGTAAAGATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGGAGAGAAGCCAAGTATAATTCATCGTGACATTAAACCAAGTAACATACTATTAGGGGAAGGTTTTGAGGCTAAGGTTTCAGATTTTGGGCTGGTAAAATCAGGGCCTACTGGGGATCAATCACATGTCAGTAGCCAAATCAAGGGGACACCAGGGTATCTTGACCCTGCTTATTGTTCAAGCTTCCATTTGACAAAATTCAGTGATGTTTACAGCTTTGGTATCATACTTTTGCAACTTGTTTCAGCTAGACCTGCTGTGGATTCCAATGAAAACCAAAGCAATCAACATATTATTGATTGGGCAAGGCCTAGCATAGAGAAGGGTAATGTTGATGAAATCATTGATGCAAATCTACTGTGTCAAAGTGAGCCATGCAATATGAAAGTTATGCTAAAGATGGGGCAACTTGGTTTAAGATGTGTGGCTCAAGAACCAAAACATCGTCCTACAATGACTCAGGTGTGTCGAGAACTAGAGCAAGCACTATACTCAGCTGATAGCTTCAACAAGAAGAAGCCTTCTAAAGGTTTGGCCATTGGATCAGTGGAAAACTATGATTGTTCACAGAGCTTTGTGAGCATAGACGGTGTTGCATTTCAGAAATTTCATATTGATATGGATAGCTTCTCCTTTAAGAGCACAAACTTAAGGACTTCAGAGTAA 1305 0.3985 MFDSHRSLLEASPPATAQSPLKNRGASAHNMLLGFIAGISTVIAVALLYCLFRRKVIPFLKQRKTLKGKEYENLNYDKIPLRRFDFEELERATKNFSLDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSDSFISVEEFINEVRLLSAVKHRNLVGLVGYCEEPEREGAKILVYEYVPNGSLLEYMMGNRKRSLTWRQRVKIAIGAARGIAYLHEGEKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGIILLQLVSARPAVDSNENQSNQHIIDWARPSIEKGNVDEIIDANLLCQSEPCNMKVMLKMGQLGLRCVAQEPKHRPTMTQVCRELEQALYSADSFNKKKPSKGLAIGSVENYDCSQSFVSIDGVAFQKFHIDMDSFSFKSTNLRTSE* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03211 434 SMART serkin_6 96 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03211 434 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03211 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Rops2g03211 434 CDD STKc_IRAK 102 374 - -
Rops2g03211 434 Gene3D Phosphorylase Kinase; domain 1 59 174 - -
Rops2g03211 434 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 175 379 - -
Rops2g03211 434 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 377 - -
Rops2g03211 434 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g03211 434 Pfam Protein tyrosine and serine/threonine kinase 99 372 IPR001245 GO:0004672|GO:0006468
Rops2g03211 434 ProSitePatterns Protein kinases ATP-binding region signature. 102 124 IPR017441 GO:0005524
Rops2g03211 434 FunFam Putative LRR receptor-like serine/threonine-protein kinase 64 174 - -
Rops2g03211 434 Gene3D Transferase(Phosphotransferase) domain 1 175 393 - -
Rops2g03211 434 SUPERFAMILY Protein kinase-like (PK-like) 74 373 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03211 Rops-Chr2 58817459 58820077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03211 33 419 Receptor kinase-like Gene Family AT3G46290 36.320 6.58e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Rops2g03211 PK_Tyr_Ser-Thr 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03211 - - var:108328541 681.019