Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g03210 | ATGGACTTTGTGGCAAATCAGTGTCCTTTGTTTGGTTCCTCCGGGAATTTCGTTGAGAGTGTCAAACGGGTTTGTAGCCTCGCCTTCTATGCCATCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTTGTGGGCACTTTGTTGGGGGCTATGACTGGAGCATTGATAGGCCAAGAGACAGAGAGTGGCTTCTTTCGAGGAGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTATTGTTCTTTGGAAATCTGAAGAATCTGGAATTGGGTGTCTCTTATACTTGCTTGATGTTATTGCTAGCTTACTGAGTGGAAGACTTGTACGTGAAAGGATAGGTCCAGCTATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGGTGAAATTAGTTTTGATGATGTTCAAAACATCTTTGACATTGGTGGTGCTAGAGGTTTGTCAAGAGCTTCAGTTGAAAAGATACCAAAGTTCACAATTACAAGTGACAAAAATGTTAATGATGCTTCTGGTGAAAGAGTTTCATGTTCAGTTTGTCTCCAGGACTTTCAGCTTGGAGAGATAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATTAAGCATGGTTCTTGCCCATTATGTAGAAGGGATCTGTAA | 699 | 0.4263 | MDFVANQCPLFGSSGNFVESVKRVCSLAFYAIIGNIFSAILTFCFAFVGTLLGAMTGALIGQETESGFFRGAAVGAISGAVFSIEVFESSIVLWKSEESGIGCLLYLLDVIASLLSGRLVRERIGPAMLSAVQSQMGAGEISFDDVQNIFDIGGARGLSRASVEKIPKFTITSDKNVNDASGERVSCSVCLQDFQLGEIVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g03210 | 232 | CDD | RING-H2_NIPL1-like | 186 | 229 | - | - | |
| Rops2g03210 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 229 | IPR001841 | - | |
| Rops2g03210 | 232 | SMART | ring_2 | 187 | 228 | IPR001841 | - | |
| Rops2g03210 | 232 | Pfam | Ring finger domain | 186 | 229 | IPR001841 | - | |
| Rops2g03210 | 232 | SUPERFAMILY | RING/U-box | 162 | 232 | - | - | |
| Rops2g03210 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 232 | IPR013083 | - | |
| Rops2g03210 | 232 | FunFam | NEP1-interacting protein-like 1 | 146 | 232 | - | - | |
| Rops2g03210 | 232 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 17 | 231 | IPR044523 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g03210 | Rops-Chr2 | 58781819 | 58783519 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g03210 | 18 | 232 | C3H Transcription Factor Family | AT5G66070 | 71.628 | 1.10e-107 | 307 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g03210 | - | - | gmx:100816939 | 395.201 |