Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03179 ATGGGAGGTGATAGTGCCGTTGAAGGTGTGACGGAATCGAATGGTTCCCAAGCTGTCAATATCAATGTTCGCTGTTCCAATGGGTCGAAAATTACCGTTCAGATTTCCCTTGATTCCACCGTTGAATCGTTTAAGGATCTTGTTGCTCGTAACAGCGATATTCCCGTGGAACAACAGCGACTCATTTATAAGGGTCGGATCTTGAAGGATGATCAAACCCTTCAAAGCTATGGTCTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTCTGCACCTGCCAATACAACTGGTGGGAACAACAGTAGTGGCACCAATATCACAACGAACAATGCCAGAGGTGCTGGTGCTAATGATGCTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCACTGTTCCCTGGACCAGGTAACAATGGCACTGGGGGCAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCACCCGAATTTAGTGAGAGAAATAATGAATGCACCTGCTATGCAGAATCTGATAAATAATCCTGAGATAGTGCGGAATCTTATTATGAATAACCCACAGATGCGAGAGCTTATGGATCGAAATCCTGATCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTGGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCGCTACAATGGCTGGTAATGTAGGAAATAATAATGCAGCAATTTCAGAGACTCGTGGTGGCCAAGCCAGGGACCAGTCAACTAATCCTTCAACTACTAGTGCTGAAACAGCTGCTGGTTCTCCCTTACCCAATATTAACCCGCTTCCTAATCCTTGGTCCTCAACTGGAACTGGAGGTGCCCAAAATAACACCAGAAGGTCAACTACTGGTGGGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCGGGTCTTGAAAGCATGCTGGGTGGCAGCGCCATGCCAGATGCTGCTCAATTGACACAGTTAATGCAAAATCCAGCCATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACTTTGAATCAGATTCTTGGTGCTAATACTGAACAGCGTGGTATGCCCGATTTAAATTCTCTTAGAGAAGTGATGCAAAATCCTGAGTTCCTTCGATTGTTTTCTTCGCCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAATCGCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCGGAGGCACTGGATCATTGAACAACATGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGATTCTTTGATACACAAGAGAACATAAGGGCTCTTATTGCCACTTCAGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGGCGGAGCAATGTCAATTTGGGGCTTTTCGTCGTCAAAACATTCCAATTCGATAACAGTTCGGAATGACACCGCCAAGGGTTTTGCTAAGCTTATTGAATTGGCCGAGGAGACCAATGTTCAGCTTGTGTTAAGTATTGAAATTGGTGTTAATGATTTCACCCTTGATATGTCTCTTGGGGAGTTCATTCTAACTCACACTGACATCAAGGTATTATTAGTCTACCCATTCATGGATCACTATTGTTTACTGTTGCTTTGGTTTCTCTTTTACATGGTGTTGTTGCAAATGATCACTGCTTCTAGTGCCATTATCTGTCTTTTGTTCCAACTTCAATATGGAACTACAATTCAAAGGTATGTGAAAAAATGCAAAATTCAAAAAATATTTCATCACCAATGTCGTCAAGAGATATTGGAAGGGAATTACATCACCTTTCAAGTTGTTGAAGAAAAAATGGACGAGCTTATGGTTGCAAAGGATTTCATTGCTCGTAAACCTCTTTCACCAACCGATTCTAAGTCCAAAAGTGATACTACTATCAATATGAGTCCGACTCAGAATGCTCATGCTGATGTTGCTAGGATTGAAGGAGGAAGATCTAGTGGAGGGGAAAGAAGGAAAAGTCATTCATATGAAAACATAAGAATTCCTAGGCTAGTGCTAGAACTTACTAGTGATCAGGATACGGGAAGAAAAAGATGGTCTTCCATGCCAATGATTGAGATTGATTCAGTTCAAGAACCCACAATTGAGGTAACTGATGTTGAGGGTCCCCTTAAGGGATCAACAAGCACTAGCATCATCAATCACAAGCGAAAACTTTATGAAGGTAGAGATAAAGTTGCTAGAGATGAAATAAGCAAGAAGAAAGTCACATCATTTAATGATACTGCTACACAGTGGAATGAAGTAAAATTTTCAAATGCACAAAAGAATGAAGTGGATCCTTCTATTGCACAGAAAAATGACATTGGTCATGCCATTAGATTTGACCTCAACCATTATCCTATTGATGAAGGTGAAGAGGTTAACAAGAAAGTAAGAGAAAATGAGGACTCACCACATACTCCAGGACTTCAAGGATTTGACCTGAATCATCAGACAGAGGGAGAGATGTACTCATCAATTGATGTTGCATACAAAACTGCGGTGGAGCCTACTGGTGGAATGAAAAGTGAAATGGAACCTCCTATTATAGAGGAAATTGAAGCTAAGAACCCTTCTTTAGAGAAAAATATAGCTTTTGCTATAGATACAGAAGAAATGGAATCATCCGCTATGGAGAAAAATGACAATGGTGGAGATGCAAGGATTTTCAAATTTGACTTGAATGAGGTTCCTGTTGCTCAAGAAGATGAAGATTGA 2970 0.4246 MGGDSAVEGVTESNGSQAVNINVRCSNGSKITVQISLDSTVESFKDLVARNSDIPVEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGSAPANTTGGNNSSGTNITTNNARGAGANDAGGLGGLGFGASLFPGPGNNGTGGNGLFGEGFPDLEQMHPNLVREIMNAPAMQNLINNPEIVRNLIMNNPQMRELMDRNPDLAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNAATMAGNVGNNNAAISETRGGQARDQSTNPSTTSAETAAGSPLPNINPLPNPWSSTGTGGAQNNTRRSTTGGDARQQAPTGLGGLGLPGLESMLGGSAMPDAAQLTQLMQNPAISQMMQSILSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQSLLSQLGQQQSTQESGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGGAMSIWGFSSSKHSNSITVRNDTAKGFAKLIELAEETNVQLVLSIEIGVNDFTLDMSLGEFILTHTDIKVLLVYPFMDHYCLLLLWFLFYMVLLQMITASSAIICLLFQLQYGTTIQRYVKKCKIQKIFHHQCRQEILEGNYITFQVVEEKMDELMVAKDFIARKPLSPTDSKSKSDTTINMSPTQNAHADVARIEGGRSSGGERRKSHSYENIRIPRLVLELTSDQDTGRKRWSSMPMIEIDSVQEPTIEVTDVEGPLKGSTSTSIINHKRKLYEGRDKVARDEISKKKVTSFNDTATQWNEVKFSNAQKNEVDPSIAQKNDIGHAIRFDLNHYPIDEGEEVNKKVRENEDSPHTPGLQGFDLNHQTEGEMYSSIDVAYKTAVEPTGGMKSEMEPPIIEEIEAKNPSLEKNIAFAIDTEEMESSAMEKNDNGGDARIFKFDLNEVPVAQEDED* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03179 989 Coils Coil 934 954 - -
Rops2g03179 989 MobiDBLite consensus disorder prediction 311 337 - -
Rops2g03179 989 SMART ubq_7 19 90 IPR000626 GO:0005515
Rops2g03179 989 PRINTS Ubiquitin signature 50 70 IPR019956 -
Rops2g03179 989 PRINTS Ubiquitin signature 29 49 IPR019956 -
Rops2g03179 989 PRINTS Ubiquitin signature 71 92 IPR019956 -
Rops2g03179 989 FunFam Ubiquitin domain-containing protein DSK2b 477 535 - -
Rops2g03179 989 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
Rops2g03179 989 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Rops2g03179 989 PANTHER UBIQUILIN 19 531 IPR015496 -
Rops2g03179 989 MobiDBLite consensus disorder prediction 707 723 - -
Rops2g03179 989 FunFam Ubiquitin domain-containing protein DSK2b 185 241 - -
Rops2g03179 989 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Rops2g03179 989 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 488 533 IPR015940 -
Rops2g03179 989 MobiDBLite consensus disorder prediction 271 302 - -
Rops2g03179 989 CDD UBA_PLICs 494 532 - -
Rops2g03179 989 SMART CBM 140 175 IPR006636 -
Rops2g03179 989 SMART CBM 395 430 IPR006636 -
Rops2g03179 989 SMART CBM 188 227 IPR006636 -
Rops2g03179 989 SMART CBM 350 392 IPR006636 -
Rops2g03179 989 SUPERFAMILY UBA-like 490 532 IPR009060 GO:0005515
Rops2g03179 989 CDD Ubl_Dsk2p_like 19 91 - -
Rops2g03179 989 Gene3D - 8 104 - -
Rops2g03179 989 SMART uba_6 494 532 IPR015940 -
Rops2g03179 989 Gene3D - 476 539 - -
Rops2g03179 989 MobiDBLite consensus disorder prediction 271 348 - -
Rops2g03179 989 MobiDBLite consensus disorder prediction 703 744 - -
Rops2g03179 989 MobiDBLite consensus disorder prediction 90 113 - -
Rops2g03179 989 Pfam UBA/TS-N domain 494 530 IPR015940 -
Rops2g03179 989 SUPERFAMILY Ubiquitin-like 13 104 IPR029071 -
Rops2g03179 989 Gene3D - 183 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03179 Rops-Chr2 58038980 58061038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03179 19 92 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 35.065 1.31e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03179 K04523 - gmx:100776447 788.104