Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03163 ATGAGCAAAGTTTGGCTTCTTGTCCTCATGATGTTCTATCATAGCTTTCCTTCAAAAGGAATCAGCAACGTTTCTGCAAGACCAAGTACCCTTAACATTGGTGCAATTTTATCTTTCAATTCAACCGTTGGAAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGGATGATATAAATTCCAATCCAACAGTTCTCAATGGAACTAAGCTTAATGTTTCAATGCAGGACACAAAATTATCCACTGGATTTCTAGGAATCATTGACTCATTACTATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCAGTCATGGCTCATGTGATTTCACATATTGCAAATGAGATGCAAGTACCTCTACTATCATTTGCAGCATCAGACCCTACACTCAGTTCACTTCAATTCCCATATTTTGTTAGGACAACACAGAGTGACCTGTATCAAATGTCTGCTGTGGCAGAAATTGTTGACCACTTTCAATGGAGAGATGTGATAGCAATTTTCATTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGTGATAAGCTAGCAGAAAAACGTGGTAGAATATCATATAAAGCACCTTTTAGGCCTGATAATGTTAGCAGGGAAGAAATAAACAATGCATTAGTTAAGATAGCTTTAATGGAATCTAGAGTAATAATCCTTCACATATACCCTGCTTTTGGTCTTGAAGTACTTCATGTGGCTCAATCACTAGGCATGATGGGTAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCCACTGTACTAGATTCAGACACATCATTGTTCACATCTTCAACCATGAATGACATCCAAGGTGTTATCACCTTGCGTATGTATACCCCAGATTCAGTAATCAAAAGAAATTTTATTTCTAGGTGGAGCAACCTTAGCCATGAAAAGGATCCATTTGAGGGTCCTTTTGGGTTGAACACCTTTGGTCTATATGCTTATGACACTGTTTGGGTTCTTGCTAATGCACTTGAGGCATTTTTCAACAATGGAGGGACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGCTAAAAGGGGACACCCTAAATTTGGATACTATGGGGGTGTTTGTTAATGGTAGCATGTTGCTTCAAAAAATTTTAGAGGTTAACAGAACTGGTTTAACAGGCCAAATGATGTTTGGTCCAGATGGAAACTTGATGCATCCATCATATGAAATCATTAATGTGATTGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGATTCCAAAGGCCTACACACTGGGGAAGCTCCTAATCATTCCAATTCCAGTGAAGGACTATATGGTGTGATCTGGCCTGGTCAAACAACTCAAACACCTCGTGGTTGGGTTTTTGCAAGCAATGGAAGACACTTGAGAATTGGGGTGCCACTTAGAATTAGTTACCGTGAATTTGTGTCGAGAATTGAGGGCACTGACATGTTTGGTGGTTATTGCATAGATGTGTTTACCGCTGCACATGACTTGTTGCCTTATCCAGTTCCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCTTCAAATACAGAACTTCTCAACATGATCACTATTGGTCAATATGATGCTGTTGTGGGGGACATTACCATTACCACAAACAGGACAAAGATAGTGGATTTTACACAGCCATATATTGAGTCAGGGCTAGTTGTTGTGGCACCAATCAGGAAGATTAAATCAAGCCCTTGGGCTTTTCTTACACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTATGGATTTTAGAACGTCGCTTAAATGATGACTTTAGAGGCCCTCCTAGAAGACAATTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAGAGAGAAAACCATCAGCACCCTTGGTCGATTAGTACTAATCATATGGCTTTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTTACCTCCATGCTTACAGTGGAACAGCTCTCTTCCCCAGTTAAGGGAATTGAAAGCTTAGCAATAAGCAATGACCGTATTGGTTATCTAAGGGGTTCATTTGCTGAAAATTATCTAACTGAGGAGCTAAACATACATAGATCTAGGCTTGTTCCTCTTAACTCTCCATCAGAATATGAGAAAGCCTTGAAGGATGGACCAGCTAATGGTGGTGTTACTGCAATAATAGATGAACGTGCTTACATGGAGCTCTTCTTGGCTACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTTACCAAGATGGGATGGGGTTTTGCCTTCCCAAGGGATTCACCCTTAGCAATTGACATGTCAACTGCCATCCTAAAACTATCAGAGAATGGTGGCCTTCAAAGAATTCATGACAAATGGCTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAGCAAGGCATAGACCGACTTGAGCTGAAAAGCTTTTGGGGTCTCTTCCTTCTAATTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTCGAATGGCATATTGCTATACTAGGCACTCCAATAATAACCCTGAAAGCTCATCATGTTCTACTTGTCTTCGATCATTTCTTTCCTTTTTGAATGAGAAAGAAGAGGAAGACAAATACTTGTCAAAGAGAAGCCGAAAGGAAAAGGCATCTAGCATAAGGGTAGCACATAAAGATGGACCATTGGATGGTTCAAGTGTTAGTGTCCATATTGAAAATGATGTCATGGTGTGA 2778 0.3999 MSKVWLLVLMMFYHSFPSKGISNVSARPSTLNIGAILSFNSTVGRVAKVAIEAAVDDINSNPTVLNGTKLNVSMQDTKLSTGFLGIIDSLLLMENDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAASDPTLSSLQFPYFVRTTQSDLYQMSAVAEIVDHFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRGRISYKAPFRPDNVSREEINNALVKIALMESRVIILHIYPAFGLEVLHVAQSLGMMGSGYVWIATDWLSTVLDSDTSLFTSSTMNDIQGVITLRMYTPDSVIKRNFISRWSNLSHEKDPFEGPFGLNTFGLYAYDTVWVLANALEAFFNNGGTLSFSNDSSLNMLKGDTLNLDTMGVFVNGSMLLQKILEVNRTGLTGQMMFGPDGNLMHPSYEIINVIGTGIRRIGYWSDSKGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRIEGTDMFGGYCIDVFTAAHDLLPYPVPFKFIPFGDGKTNPSNTELLNMITIGQYDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKIKSSPWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRLNDDFRGPPRRQFVTIIWFSFSTLFFAHREKTISTLGRLVLIIWLFVVLILNSSYIASLTSMLTVEQLSSPVKGIESLAISNDRIGYLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGGLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLIGIACFIALLCYVIRMAYCYTRHSNNNPESSSCSTCLRSFLSFLNEKEEEDKYLSKRSRKEKASSIRVAHKDGPLDGSSVSVHIENDVMV* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03163 925 Gene3D - 732 814 - -
Rops2g03163 925 FunFam Glutamate receptor 578 708 - -
Rops2g03163 925 FunFam Glutamate receptor 147 307 - -
Rops2g03163 925 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Rops2g03163 925 CDD GluR_Plant 467 807 - -
Rops2g03163 925 Gene3D - 461 576 - -
Rops2g03163 925 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Rops2g03163 925 SUPERFAMILY Periplasmic binding protein-like II 443 809 - -
Rops2g03163 925 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Rops2g03163 925 SUPERFAMILY Periplasmic binding protein-like I 26 458 IPR028082 -
Rops2g03163 925 FunFam Glutamate receptor 462 578 - -
Rops2g03163 925 Gene3D - 147 427 - -
Rops2g03163 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 867 IPR015683 -
Rops2g03163 925 Gene3D - 49 402 - -
Rops2g03163 925 PIRSF IGluLR_plant 1 920 IPR017103 -
Rops2g03163 925 Gene3D - 577 716 - -
Rops2g03163 925 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Rops2g03163 925 FunFam Glutamate receptor 704 811 - -
Rops2g03163 925 Pfam Bacterial extracellular solute-binding proteins, family 3 489 808 IPR001638 -
Rops2g03163 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Rops2g03163 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Rops2g03163 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03163 Rops-Chr2 57694253 57698905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03163 1 894 Ion Channels AT1G42540 59.324 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03163 K05387 - gmx:100790502 1602.42