Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03159 ATGAGCAAAGCTTGGATTCTTGTCCTTGTGATCTTCTACAGTGGCTTTCCTTCAAATGGAATCAGCAATGTTTCTATAAGACCAAGTGTTGTTAATATTGGGGCAATTTTATCTTTCAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGGAAGATATAAATTCCAATGCAACGATTCTCAATGGAACTAAGCTTAACCTTTCAATGCAGGATACAAAATTCTCCAGTGGATTTCTAGGGATTATTGACGCATTTATGTTGATGGAGAGCAACACCGTGGCCATTATTGGTCCCCAGTACTCAGTCATGGCTCATGTGATTTCACATATTTCAAATGAGATGCAAGTACCTCTACTATCATTTGCAGCAGCAGACCCTACACTCACTTCACTTCAGTTCCCATATTTTGTTAGGACAACACAGAGTGACCTATATCAGATGTCTGCTGTGGCAGAAATTGTTGACCACTTTCAATGGAGAGATGTAATAGCAATTTTTGTTGATGATGATCATGGAAGAAATGGGGTAGCCGCCTTAGGGGATAAGCTAGCAGAGAAACGTTGTGAAATATCATATAAAGCACACTTTAGGCCAAATAATAATATTAGCCTTGAAGAAATAAACAATGCATTAGTTAAGATAGCTTTAATGGAGTCTAGAGTAATAGTCCTTCACTTATTCCCTGCTTTTGGTCTAAAAGTACTTCGTGCGGCTCAGTCACTAGGCATGATGGGAAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCTACAGTGCTAGATTCAGACACTTCCTTGTTCACATCTTCAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGCATACACCAAATTCTAAAATCAAAAGAAATTTTGTTTCCAGGTGGAACAAACTTAGCCAAAAAAATGATCCTGATCAGGGCCCTTTTGGCTTAAACATCTTTGGTCTATATGCCTATGACACTGTTTGGGTTCTTGCTTATGCACTTGATTCATTATTAAGCAATGGGGGGAATTTGTCATTTTCAAATGATTCTAGTCTAAACATGTTAAGGGGGGATATCCTTCATTTGGATACTATGGGGGTCTTTCTTAATGGTAGCATGTTGCTTCAAAAAATTTTAGAGGTCAATAAAACTGGTTTAACAGGCCAAATGATGTTTGATTCAGATGGAAATTTAATGCATCCATCATATGAAATCATTAATGTGATAGGTACTGGAATTAGAAGGATTGGTTATTGGTCAGATTCCAAAGGCCTGCACACTGAGGAAGCTCCTCCTAATCATTCCAATTCTAGTGAAGGACTATATGGTGTGATCTGGCCTGGTCAAACAACTCAAACACCTCGTGGTTGGGTTTTTTCTAACAATGGAAGACACTTGAGAATTGGGGTGCCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGAATTGAAGGCACTGACATGTATAGTGGCTATTGTATAGATGTGTTTACTGCTGCACTGAACTTGTTGCCTTATCCAGTTCCGTACAAGTTTATTCCATTTGGTGATGGTAAAACTAACCCTTTAAATTCAGACCTTCTCCACATGATCACAACTGGTGCCTTTGATGCAGTAGTGGGGGACATTACTATTACCACAAACCGGACTAAGACAGTGGATTTTACACAACCATATATTGAGTCTAGGCTAGTTGTTGTGGCACATATCAAGAAGTTGAATTCCAGTGCTTGGGCTTTCCTAACACCATTCACTCCAATGATGTGGTTTGTGACTGGGATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGTGTAAATGATGACTTTAGAGGCCCTGCTAGAAGTCAATTTGTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTCAGCACCCTTGGTCGTTTGGTACTAATCATATGGCTTTTTGTGGTTCTGATACTCAACTCAAGTTATATTGCAAGCCTTACTTCAATCCTCACTGTGGGAAAACTCTGCTCCCCAGTTAAGGATATTGAAAGCTTAGTAATAAGCAATGACCGTATTGGTTACCTGAGGGGTTCATTTGCAGAAAATTATTTGACTGAGGAGCTCAACATACACAGATCTAGGCTTGTTCCTCTTAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGTCCAGCTAGCGGTGGTGTTATTGCAATAATAGATGAACGTGCATACATGGAGCTTTTTCTAGCAACCAGATGTGACTTTGGTATTGTTGGTCAAGAGATCACCAAGATGGGATGGGGCTTTGGCTTCCCAAGGGAATCTCCCCTAGCAATTGACATGTCAACTGCCATCCTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCATGACAAATGGCTAACAAGACGTGCTTGCAACTCAGGAGGTGCAAAACAATGCATAGACCGACTTGAGCTAGAAAGCTTTTGGGGTCTCTTCCTTCTAATTGGCATAGCATTGTTCATTGCTCTCCTTTGCTATGTTATTCGAATGGTTTATTGCTTTAGCAGGCACTCCAATATTAACCATGAAAGGTCTACTTCTCTTCGATCATTCCTTTCCTTTGTGAATAAGAAAGAAGAGTAA 2652 0.4001 MSKAWILVLVIFYSGFPSNGISNVSIRPSVVNIGAILSFNSTIGRVAKVAIEAAVEDINSNATILNGTKLNLSMQDTKFSSGFLGIIDAFMLMESNTVAIIGPQYSVMAHVISHISNEMQVPLLSFAAADPTLTSLQFPYFVRTTQSDLYQMSAVAEIVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKRCEISYKAHFRPNNNISLEEINNALVKIALMESRVIVLHLFPAFGLKVLRAAQSLGMMGSGYVWIATDWLSTVLDSDTSLFTSSAMNDIQGVITLRMHTPNSKIKRNFVSRWNKLSQKNDPDQGPFGLNIFGLYAYDTVWVLAYALDSLLSNGGNLSFSNDSSLNMLRGDILHLDTMGVFLNGSMLLQKILEVNKTGLTGQMMFDSDGNLMHPSYEIINVIGTGIRRIGYWSDSKGLHTEEAPPNHSNSSEGLYGVIWPGQTTQTPRGWVFSNNGRHLRIGVPLRISYREFVSRIEGTDMYSGYCIDVFTAALNLLPYPVPYKFIPFGDGKTNPLNSDLLHMITTGAFDAVVGDITITTNRTKTVDFTQPYIESRLVVVAHIKKLNSSAWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRVNDDFRGPARSQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVGKLCSPVKDIESLVISNDRIGYLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPASGGVIAIIDERAYMELFLATRCDFGIVGQEITKMGWGFGFPRESPLAIDMSTAILKLSENGDLQRIHDKWLTRRACNSGGAKQCIDRLELESFWGLFLLIGIALFIALLCYVIRMVYCFSRHSNINHERSTSLRSFLSFVNKKEE* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03159 883 Pfam Bacterial extracellular solute-binding proteins, family 3 490 810 IPR001638 -
Rops2g03159 883 SUPERFAMILY Periplasmic binding protein-like II 445 810 - -
Rops2g03159 883 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Rops2g03159 883 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 861 IPR015683 -
Rops2g03159 883 Gene3D - 757 816 - -
Rops2g03159 883 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Rops2g03159 883 Gene3D - 49 403 - -
Rops2g03159 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Rops2g03159 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Rops2g03159 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Rops2g03159 883 FunFam Glutamate receptor 464 580 - -
Rops2g03159 883 FunFam Glutamate receptor 580 710 - -
Rops2g03159 883 CDD PBP1_GABAb_receptor_plant 32 428 IPR044440 -
Rops2g03159 883 Gene3D - 463 579 - -
Rops2g03159 883 FunFam Glutamate receptor 706 813 - -
Rops2g03159 883 PIRSF IGluLR_plant 1 883 IPR017103 -
Rops2g03159 883 CDD GluR_Plant 469 809 - -
Rops2g03159 883 Gene3D - 147 428 - -
Rops2g03159 883 Gene3D - 580 714 - -
Rops2g03159 883 Pfam Receptor family ligand binding region 49 413 IPR001828 -
Rops2g03159 883 FunFam Glutamate receptor 147 307 - -
Rops2g03159 883 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03159 Rops-Chr2 57590843 57595533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03159 1 883 Ion Channels AT1G42540 57.993 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03159 K05387 - gmx:100789442 1471.83