Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03148 ATGACTCGCACGCTGAGAATCCTCCAATCTCCGACCAACACCGCGGTGGCGCCACCGCCGGAGACCGTATCGGTGGAGTCTGACTTCGTGGTGATCCTCGCGGCGCTCCTCTGCGCCCTCATATGTGTGGTGGGTCTCACCGCCATAGCTCGCTGCGCCTGGCTCCGCCGTGGACCTGTTGCCGGAAACTCGCCGGGAAGGTCCATTGCCAACAAGGGTCTAAAAAAGAAGGTGCTCAATTCGCTGCCGAAGTTCACCTACGTCGTCGACGGCGGCATCCCCGCCGGCGGCAAGTGGGTGGCCTCGTCGGAATGCGCTATTTGCCTGTCGGAGTTCTCTGCCGGCGACGAGGTCAGGGTGCTGCCTCAGTGTGGCCATGGCTTCCACGTGGCATGTATAGACACTTGGCTTGGATCCCACTCCTCATGCCCCTCTTGCCGCGCCCCCTTCGCCGCCGCTAGGTGCCAGAAATGCGGCCATTACCCGATGGTTTCCGCCACAACCGCCGCCGGTGAAACGGAGTCCAAGTATGTAGGTGGCGACAATGCTATTGTTAATTGTAATAGTAGCATTGGTATTGGCAGCCATAGCCACAGTGTTAATAATAATAATAGTTTCTTGCCTTGA 627 0.5853 MTRTLRILQSPTNTAVAPPPETVSVESDFVVILAALLCALICVVGLTAIARCAWLRRGPVAGNSPGRSIANKGLKKKVLNSLPKFTYVVDGGIPAGGKWVASSECAICLSEFSAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAPFAAARCQKCGHYPMVSATTAAGETESKYVGGDNAIVNCNSSIGIGSHSHSVNNNNSFLP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03148 208 CDD RING-H2_EL5-like 104 147 - -
Rops2g03148 208 Pfam Ring finger domain 104 147 IPR001841 -
Rops2g03148 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 160 IPR013083 -
Rops2g03148 208 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 159 - -
Rops2g03148 208 SUPERFAMILY RING/U-box 104 152 - -
Rops2g03148 208 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Rops2g03148 208 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03148 Rops-Chr2 57423614 57424303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03148 1 158 C3H Transcription Factor Family AT1G20823 58.960 5.90e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03148 - - adu:107487390 249.98