Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03142 ATGAAAAGTGGAGAATCATCTCAAAACTCTCAAGAGAGTGAAAACAACACCAATATCCCTTTGCCATCCATAGCTACTCAATTACGTGAGTTTCTTCCTCCACTCTCACCAACACAGTTTGACATCTTCACAGACATCACACCTACACCACCGCTAACGGAGGAACCAAACAACACTTCTTATAAATACAACTTCGTAAATGAAGGGTTTGGATCTTATCCTGATTGGTACGCAGCTGTCCCGAATGACATGTTGGCAACGTACGATAAGTCAAATTCTTTTGAATCTTTGAGTCCGTTACGTGTCTTCGATGACATTGATCCCATTCCGATTCCATCACAACCTCAACCACTGCAACAATCACCATCACAACCACTTGTTGGTTCCGAATTGATGGATTCTTCTTCTTCCCTTGTTGTTGTCCCTACTGCTGATGAGATTGAGAACCAAGTGAACGCTCCTTCAACTATTACTACTTCTCTGCCCTCTGCCACAGTGGACGGTGATGAAACTGCGAATGCAATGGTTTCAGGTGAATCATCCACGAAACAGAAGAGTCCGTCACCACCGACATTTCAAGAGATGGAACAGCCGAATGTGAATCCTTTCACACCACAGAGCGCAGCTGCTTGTGAAGCCCAATTACTCGCTAAGTTGTGGGATCACTGGTCAAAAGAAAGTATTCTGACGCCAACACTCATCTTAGTAGATCACAAAGAGGATGTTGCAGAGAAAATAATATCATTTGCTAGAAACAAGGAATTCGCTTGCGTCGTAGGAGCAGTTGGTTGCTTATCTCTTATTCAGCTTCGTCTGCAAGAAAAGACCGTAACTTATAAGGGAATGTTTGAAATTATCAAATTGGTTGGAACTTTTGTTCATCCAAAAGAAGGTCAACAAGAAGAAAGTGCAGCTCAGATATTTATTACATTTAGTGGAGCTAATGGTGAGGTTTTTGGAGGACCTGTGCATGGACGCTTAATTGCTGCACATCCTTGTCAGATGGTTGTAGTAACTTTGGCTCCAAAATTGGCTAACAGTTAA 1044 0.4234 MKSGESSQNSQESENNTNIPLPSIATQLREFLPPLSPTQFDIFTDITPTPPLTEEPNNTSYKYNFVNEGFGSYPDWYAAVPNDMLATYDKSNSFESLSPLRVFDDIDPIPIPSQPQPLQQSPSQPLVGSELMDSSSSLVVVPTADEIENQVNAPSTITTSLPSATVDGDETANAMVSGESSTKQKSPSPPTFQEMEQPNVNPFTPQSAAACEAQLLAKLWDHWSKESILTPTLILVDHKEDVAEKIISFARNKEFACVVGAVGCLSLIQLRLQEKTVTYKGMFEIIKLVGTFVHPKEGQQEESAAQIFITFSGANGEVFGGPVHGRLIAAHPCQMVVVTLAPKLANS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03142 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 232 340 IPR005175 -
Rops2g03142 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 162 341 IPR039605 GO:0003680
Rops2g03142 347 MobiDBLite consensus disorder prediction 105 131 - -
Rops2g03142 347 MobiDBLite consensus disorder prediction 173 197 - -
Rops2g03142 347 CDD DUF296 230 340 IPR005175 -
Rops2g03142 347 ProSiteProfiles PPC domain profile profile. 226 347 IPR005175 -
Rops2g03142 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 228 342 - -
Rops2g03142 347 Gene3D - 232 346 - -
Rops2g03142 347 MobiDBLite consensus disorder prediction 174 197 - -
Rops2g03142 347 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03142 Rops-Chr2 57220423 57224756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03142 204 337 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 32.609 8.56e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03142 - K06934 han:110899596 79.7221