Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03100 ATGGGATCCAATGGTAGCAAAGCCACTTCTTCCTCTTGTCGTTCCTCTACGACGTCGTCTTCTTCGGGGAGTTTAAGGAAGGGTCGATCTAAAGGCCTTAGAGGTTTTCATTCTTATTGTCTTGGAACAAGTTCTGGATCTCACGACAGTGATAATGAGGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTTACATACGCCGATGACAATGAAACGGACTCAAATGAGGTAAAAACAGAATCTTTAAGAAAGGTTAAAGCTGGTGAAATGACTTGTATGCCTTCTAATATTGAACTTGATGAGTGGGATGAAACAAGCATCTCCAACACTTCCTCCAGAATTGGTAGCAGCTCTGTCCATGCTTCTTCAACTCATTCGTTGAACGCTACAAGTCAATTGCTTTCTCGGTTTAGCATCATTCCAGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAATGAAGATGAGCATAATCTACATCAGGGACCTTCTGGCAGTTTGATTAATAGAAATGAAACTCAACAATGTAGTGACTCGCTTCCTGCATCTTTTGTTAATCAAATACCTTCACAATCTCATGAAGATGCTTTGAATAATCTAAGGTCAAATGTCCTGGCATCAGGTTTGCCTATCAACTTGCAGAACAATCCCACAGGTGGTGGAATTGGTACAAGAGAAGAGGTGGATATGAACTTATTTTCTCCGAGAATTCAAGCAGGGACAGAAAATGTTGAGACTAGACATTTAGATCGACAAAATGGAGCTCAAGAACCAGTTGAACAGAATGCTCGTTTTAGCAGAAATCTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCTGACCTCACCTTTTGCCCTCTGCAACAAGAGAGAGAACCAAGAGATGCTAGTCAAGATACTGGAAGGCGAGCAGTTGAGGGAGATTCAAGAATGTCACCATCTGATCATGGTGCTGATAATTCTTCTTCTACATCCGGATATCCTCCATCTAGTATATCTAACTCCATGTTTAGCATCCAAGACTATGAGGTTGAGACTTCCCGATCAAGAGAAGGTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGATTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTTGTTGTACATGCCGATTCAGAAATCGTGACAGTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTACACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCCCCTAATGATGTTGTGGAATCCTTGCCTGTCAAATTATATGCGAAGGTGCATAAGCATCAAGAAGATGCTGCACAATGCTATATATGCCTTGTGGAATATGAGGATGGAGACAGCATGCGGGTACTGCCTTGTCATCATGAATTCCATAGATCATGTGTAGACAAGTGGCTGAAGGAGATCCACAGGGTATGCCCACTATGTCGTGGGAACATCTGCATATCTGATTCACTGCCAACAGAGAACTTCAGTGGCTAG 1731 0.424 MGSNGSKATSSSCRSSTTSSSSGSLRKGRSKGLRGFHSYCLGTSSGSHDSDNEDQVCDQNKVNGSDVTYADDNETDSNEVKTESLRKVKAGEMTCMPSNIELDEWDETSISNTSSRIGSSSVHASSTHSLNATSQLLSRFSIIPGNISFRLSRTTSLGSSRPCPVSSASLSIFDNEDEHNLHQGPSGSLINRNETQQCSDSLPASFVNQIPSQSHEDALNNLRSNVLASGLPINLQNNPTGGGIGTREEVDMNLFSPRIQAGTENVETRHLDRQNGAQEPVEQNARFSRNLSVGRLRDRVLRRSTLSDLTFCPLQQEREPRDASQDTGRRAVEGDSRMSPSDHGADNSSSTSGYPPSSISNSMFSIQDYEVETSRSREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGCCTCRFRNRDSNSNDDTGARASISRIVTLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYAKVHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHRSCVDKWLKEIHRVCPLCRGNICISDSLPTENFSG* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03100 576 SUPERFAMILY RING/U-box 496 566 - -
Rops2g03100 576 MobiDBLite consensus disorder prediction 312 361 - -
Rops2g03100 576 MobiDBLite consensus disorder prediction 341 361 - -
Rops2g03100 576 MobiDBLite consensus disorder prediction 57 71 - -
Rops2g03100 576 MobiDBLite consensus disorder prediction 1 81 - -
Rops2g03100 576 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Rops2g03100 576 MobiDBLite consensus disorder prediction 1 27 - -
Rops2g03100 576 MobiDBLite consensus disorder prediction 319 340 - -
Rops2g03100 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 564 IPR013083 -
Rops2g03100 576 SMART ring_2 518 559 IPR001841 -
Rops2g03100 576 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Rops2g03100 576 Pfam Ring finger domain 517 560 IPR001841 -
Rops2g03100 576 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03100 Rops-Chr2 56013670 56018651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03100 35 567 C3H Transcription Factor Family AT5G45290 48.188 3.84e-118 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03100 - - gmx:100800896 842.417