Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03082 ATGGCTGATAATAATGATCATCAGCAGTCTCTCGTCACTGGCAGATTTGGTGTCTTACTATTTGCCATGGGTTCAGCCAGTTTTATGATCACAATGTACCATCTCTTAGTCCTTTGTTGCCAAAACGCAGCAGAAGAGGCACGACGTCGTCACAGGAATGTAGAACAAGTCACCACCACCGTAGATTTTGGGCCCTCACAAACGCCGTCCACCGGAGAGGGCGTTTCATTGTCACACCTGATTCCAGCTCACAAGTATGTGAAGAAGAAAAAGGAGAAGAATTGTGTGGGAGATTGTGATGGAGATGATGATGATGGGACTTGTGCTGTGTGCTTGGGAGAATTTGAAGAGGGTGAGGAGGCAAGGGCGTTGCCCTTGTGCATGCACTCTTTCCATGTTGCATGCATAGATATGTGGCTCCATTCCCATTCCACGTGTCCACTTTGCCGGGGTGATGCCACGCCATCGCCAGCGGTTCCACAGCATTCGCCGGAGATTGGTTCCGGCGAGGTGAATGCACATCATAGCATAGATATGATGCAAATAGCTCTTGTCCAAAATGGGTTGGTGCGACGGTGA 579 0.494 MADNNDHQQSLVTGRFGVLLFAMGSASFMITMYHLLVLCCQNAAEEARRRHRNVEQVTTTVDFGPSQTPSTGEGVSLSHLIPAHKYVKKKKEKNCVGDCDGDDDDGTCAVCLGEFEEGEEARALPLCMHSFHVACIDMWLHSHSTCPLCRGDATPSPAVPQHSPEIGSGEVNAHHSIDMMQIALVQNGLVRR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03082 192 Pfam Ring finger domain 107 150 IPR001841 -
Rops2g03082 192 CDD RING-H2_EL5-like 108 150 - -
Rops2g03082 192 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Rops2g03082 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 157 IPR013083 -
Rops2g03082 192 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 153 IPR044675 -
Rops2g03082 192 SUPERFAMILY RING/U-box 102 156 - -
Rops2g03082 192 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03082 Rops-Chr2 55569556 55570134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03082 19 175 C3H Transcription Factor Family AT5G17600 35.542 2.94e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03082 - - lja:Lj0g3v0111029.1 202.216