Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03063 ATGGATCCTGGTCGCTTTGGTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGCTGCGGTCCATGAGCCAAATTTCCGGGTTGGTGGTTCTTATGATGAAAGACGATTTATAGATGATAGATATCCAAGGGATGCTGTATACCAGAGAAATGCTTTCCACCGTGATGTTTTGGACAGGGAGGCCTATCTGCCTCCCGGACCTGCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGATTATGATGAAGACTATCCACTTGAAAGGGAATCTAGACGTTTTCAGAGGCCTTATCACGAATCATATAATCAGATTGATGGTTTCAGAGATCGTGAAGTTGACATGTATCCAGAATATGATAAGTTTCGAGATGGCTATACTGGCATTGAAAATTATGGTGATCAAGGATATGATAAACCTGCCAGGTTTGTAGGGCATGACCGAGATGATTATGCATATGATGATTATGGCTACAAGTCTCGTGGTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGACTCTGATCATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGTGAATCACGTGATCGGGAACGAGATAAGAGAGGTCTTAGCCGGGAAAAAGATTCAAGTCCGCATAGGAGACATGAGCGTTCACATTCACGTTCCCGTTCTCGATCCCGGTCTCATTCTCATTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATCGGGAAGACAGCTTTGTTGACAGTCGATATGATAGAAGTGAAAGACGCCGGGATCGTGAGGATAAACGTCATGTTGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCGTTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTCGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTTCAGATGGAGCTATGAAATCAGGTCATAGTCATAAGAGTATTACAGTACCATCTGATTGGATGTGCACTATATGTGGTTACATCAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCTCCGACAGCTGATATCTCTTTATCAAATTCGACAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCCGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATCAAGGATCTTCGTCTCGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTCTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACGACCCTCGAGAAGAATGGGCAGATTCTGAGAGTAGCTTATGCAAAAAGCATACTGGGTCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGTAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGACTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAACAATCTACTGGTCCAGAGCAAACTGGTGCAGAAGTTGGTGCTCCACAATCAGGATTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCATCAAACTCAGCAGTACATCCCTTGCACTGATCAAAATCAGAATAAAACAGCTAACAATGAGTCTGAACCTTCCAAGGCATCTGATGGTTCTAGTAGTAAAAAGGTGGTGATTTCTGCTCCAGCTACTACTGTTACATCAACTGAGAAGCCAGCTTCTTTGGCAGATGCTGTCCAGGCAGCTGCAACTGCTGCTTTAGCCGCAGAGAAGAAAGAGAGAGAAAAATTGAAAGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTCTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAGGACAATCAGTTATCTGTCTCAGCTGATGACAGGTCATATTCCTCTGGACATTCTGCAAAGAGTAAGTTAAAAAATGAGACTTCAGTAAGGGAAGGTAACACATCTAATCTGGTAAGTCACACAACTCTTGCCCAGGTTGCTGCTACTGATTCTCAAGCACAGCCACGGCCTGTCAGTAATAGCCTTGGAGGCACACTGATGGGAGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTATTCTGGTTCCACATCTGCTGCATCATCTCTGTCAAGTTCATCTTCAGCAAATGTTGATGTACAGACAACTGCTACTCCCTTTAGAACAGATGTCTCTGCTCTGGGTTCATATACACCATCTGTGGCTGTTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAAGAACAGCCTCAAACAACCTACAGGGATCGTGCGGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACATTGAAATTGGGGATTCAAATCGAGATTTCACGTCAAGAAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCGTGGTTGGAGATGTCAACCTCGATACTTTTGAGGTGATTACGGCAGACAAAGCACTCGATGAAAACAATGTTGGTAATAGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCAGTCCAGGCACAAACCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTTGACCCTAGCCTCGAGGTGCAAGCTGGGGATAGTTACAAGATGCTCATTCATAAAAAAGCTCTTGCCAGGTTTCGGGAAATGTCAGATACTGGTCCTAAAGAAGCACCGTCGACCCACCATGGGGGGCGCATGCTAACTGGGAACTTGAACATTGGCATCTTATGGTACGATACAATCCCAAGGGTGCAAAAGGAAGCCATCTTATCCTTCCTTAGGTCCCTAAATACCAACCTCAAGTCTCATCATGGTGGAACATTGTGGAGAGCTATCAAACATTCGCCAAAATGCCAGCACGTGGCACCCCCAAAATTCCAGTCAAAGTTGTGA 3411 0.4515 MDPGRFGLHQGWDNNSALEGYAAVHEPNFRVGGSYDERRFIDDRYPRDAVYQRNAFHRDVLDREAYLPPGPAVGHWSQSKRRDYDEDYPLERESRRFQRPYHESYNQIDGFRDREVDMYPEYDKFRDGYTGIENYGDQGYDKPARFVGHDRDDYAYDDYGYKSRGSHHRREDSHERDYDHGRHSYDSDHERGSRRDSNWRRRESRDRERDKRGLSREKDSSPHRRHERSHSRSRSRSRSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSFVDSRYDRSERRRDREDKRHVEHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGAGSDGAMKSGHSHKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPTADISLSNSTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGPEQTGAEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKTANNESEPSKASDGSSSKKVVISAPATTVTSTEKPASLADAVQAAATAALAAEKKEREKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSVSADDRSYSSGHSAKSKLKNETSVREGNTSNLVSHTTLAQVAATDSQAQPRPVSNSLGGTLMGVIRGSGRGVVKSDTYSGSTSAASSLSSSSSANVDVQTTATPFRTDVSALGSYTPSVAVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADIEIGDSNRDFTSRKGDPMPFPPGVGGGRVVGDVNLDTFEVITADKALDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQTMENRAGLGSQQKKFDPSLEVQAGDSYKMLIHKKALARFREMSDTGPKEAPSTHHGGRMLTGNLNIGILWYDTIPRVQKEAILSFLRSLNTNLKSHHGGTLWRAIKHSPKCQHVAPPKFQSKL* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03063 1136 MobiDBLite consensus disorder prediction 158 226 - -
Rops2g03063 1136 SMART rrm1_1 460 535 IPR000504 GO:0003723
Rops2g03063 1136 SMART rrm1_1 303 378 IPR000504 GO:0003723
Rops2g03063 1136 Pfam OCRE domain 601 649 IPR041591 -
Rops2g03063 1136 SMART G-patch_5 978 1024 IPR000467 GO:0003676
Rops2g03063 1136 MobiDBLite consensus disorder prediction 575 601 - -
Rops2g03063 1136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 363 IPR000504 GO:0003723
Rops2g03063 1136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 461 527 IPR000504 GO:0003723
Rops2g03063 1136 MobiDBLite consensus disorder prediction 756 791 - -
Rops2g03063 1136 CDD OCRE_SUA_like 598 650 IPR035623 -
Rops2g03063 1136 Gene3D - 402 434 - -
Rops2g03063 1136 SUPERFAMILY RNA-binding domain, RBD 457 546 IPR035979 GO:0003676
Rops2g03063 1136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 539 IPR000504 GO:0003723
Rops2g03063 1136 PANTHER RNA-BINDING PROTEIN 187 1053 - -
Rops2g03063 1136 SUPERFAMILY Ran binding protein zinc finger-like 400 434 IPR036443 -
Rops2g03063 1136 Pfam Phosphate-induced protein 1 conserved region 1066 1108 IPR006766 -
Rops2g03063 1136 SMART zf_4 406 430 IPR001876 -
Rops2g03063 1136 Pfam G-patch domain 981 1022 IPR000467 GO:0003676
Rops2g03063 1136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 382 IPR000504 GO:0003723
Rops2g03063 1136 CDD RRM1_RRM2_RBM5_like 457 537 - -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 886 910 - -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 158 293 - -
Rops2g03063 1136 ProSiteProfiles G-patch domain profile. 980 1026 IPR000467 GO:0003676
Rops2g03063 1136 SUPERFAMILY RNA-binding domain, RBD 219 380 IPR035979 GO:0003676
Rops2g03063 1136 MobiDBLite consensus disorder prediction 653 676 - -
Rops2g03063 1136 ProSiteProfiles Zinc finger RanBP2 type profile. 404 433 IPR001876 -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 836 858 - -
Rops2g03063 1136 ProSitePatterns Zinc finger RanBP2-type signature. 408 427 IPR001876 -
Rops2g03063 1136 Gene3D - 266 401 IPR012677 -
Rops2g03063 1136 Gene3D - 445 581 IPR012677 -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 835 858 - -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 227 243 - -
Rops2g03063 1136 MobiDBLite consensus disorder prediction 244 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03063 Rops-Chr2 55063689 55077475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03063 301 523 Eukaryotic Initiation Factors Gene Family AT2G36660 25.896 3.67e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03063 K13094 - gmx:100777686 1701.41