LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03062	ATGGATGAGGTTGGCCCTGGTACTGAAGCGGAGCAGCCTCAGTCCAGAGACTCCGTAGCCGCTGCCACGTCAGCATCGGCGTCGGTGGCATCGCCATCGTTAGGATGGCGTCCCCGGGCGCTTGCGTTTACTCCTTGTGTACCGCAGGGTGAAGAAGTTACTGCTGGAAAGTCAAAACCATTGCGTGCGGTTGTGAGGAAACCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGACCTAAATCCAAAAAGATTTTTGACCAGCCCGTCTATTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGATCCATTTAGAGAAAAATAGAAGATATATTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAACAAGAAGTATGATCCAGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAACTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGACGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACAAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGTTCAGCATGCATGGAAAACCGTACTGTTTACTCCTATATTCAGAGTCGTTATTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGGGCTTCAGAATTTGATCTTTTGCGGCGGATGATTGAAATACTTGGAGGACAACCACCTGATTATCTACTAAGGGATGCCAAAAACACAAGTAAATTCTTTAAGTGCATCGGGAGTCTCCAGAACATAGAGAATAGTGAGAGTTCCAAAAATAGAAGTGTATATCAAGCATTGACGGTGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAATCATATGAACCTTGAAGCAATCGTTACAAACTATCCCTACAGAAAAAACCTACCTAAGGAAGATATTGTCAAAGAAAGTCAAATACGATTGGCACTTATTGACTTTTTGAAAGGGCTTGTTGAATTTGATCCTACAAAACGCTGGTCACCCTTCCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTACACAACCTTACAAGCCTCCCCCTGAGACCCCTCACATTCCGGTAGTTCAAAATATCAAGGTTGATAATCATCCAGGTGGAGGGCACTGGTTTGCTGCTGGTCTGTCACCTAATGTTACAGGCAAAAGCAGAGCATCCCTCTATAGCAGTCCACATTTTCAGATGATGCAACATCCATCTGCTAATAGTTATGGCAGTGTAGGAAGCCATGGGAGCTATAATGATAGTGTTGGGCTAGGAAGCAGCTATGGAAGTCATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGAACGTGCACAGCCAGGGAAATATGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGAGTTAAGTACCAACCTGGGAATGGGCTGGGTGTGAGTCCATCAGCTGCAAATTTTGCTCCTCTGCCCCTTGGTGCGAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCTGTTGGTTCTCCAGGACACTATGGACCTACATCTCCTGCAAGAGGAACTTCTCATGGATCACCTTTAGGCAAGACAGCTGCAGCTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACGACATTTTCTTCTCATTGGCATGGTCAACATCCTGACAGCTCAAGCCATGCTGAGGGGACATCCCAAGCTCTTGGCAGTTCACCATCGTATCTACAGTCAAATATTAATCCTGGAAACTGGAAGCAGCGAGGAAGTGGAGATTTGATTCATGACAATGTGGAGACAGGCTTTTCATTGCCTGATCCTGGAGATTGGGATCCTAATTATAGTGATGAACTACTACTTCAAGAGGATGGTTCAGATGAAAGCTGCTTGACGAATGAGTTTGGAAAAAGTATGAATCTTGGTTCCACTGAACCATGGTCTGGATTTGGAAGGTTCAACCACATCTCCAACTCAAGCTCTCCAATAATTGTGCAGAGACTAAATGGACCAGGTCAAACATTTTCTAATGTAGAGATGGGTAGCCCTCCAGCACATGATCTTCACCAAGCATACATACCCTCTATGTCAAAGCCTTTTCATCTCATGCCTCATATTTTACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTCGCACATGGTAGACCCCCCCAGGGTGGTGAGTGGAACCCAATTAAGATTCAGGCTCCTCCTTCTGGTTTCAGCAATGTGGGCCCACGTTCTCCCAGGAATACGTCATTCACCAGCAGTATGACATGGGGGCGAAGAATGAATCCTCCTGTCTCAAGCATACCACCAACATCGCGTGCAAGAAAAGACTTTGCAAGGATAGACTAG	2817	0.4281	MDEVGPGTEAEQPQSRDSVAAATSASASVASPSLGWRPRALAFTPCVPQGEEVTAGKSKPLRAVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSIGVLNDGYDNVNSDLILTVNFVLIHLEKNRRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYLLRDAKNTSKFFKCIGSLQNIENSESSKNRSVYQALTVEEYEARDLKKPSIGKEYFNHMNLEAIVTNYPYRKNLPKEDIVKESQIRLALIDFLKGLVEFDPTKRWSPFQASKHPFVTGEPFTQPYKPPPETPHIPVVQNIKVDNHPGGGHWFAAGLSPNVTGKSRASLYSSPHFQMMQHPSANSYGSVGSHGSYNDSVGLGSSYGSHGESSNMFAYYSPIGPSGMNVHSQGNMSMLGNSPDARRRVKYQPGNGLGVSPSAANFAPLPLGASPSQFTPPSSYSQVSVGSPGHYGPTSPARGTSHGSPLGKTAAASQFNRRKNWGHSGSPQTQETTFSSHWHGQHPDSSSHAEGTSQALGSSPSYLQSNINPGNWKQRGSGDLIHDNVETGFSLPDPGDWDPNYSDELLLQEDGSDESCLTNEFGKSMNLGSTEPWSGFGRFNHISNSSSPIIVQRLNGPGQTFSNVEMGSPPAHDLHQAYIPSMSKPFHLMPHILQNSPSRFGHQSVQRFAHGRPPQGGEWNPIKIQAPPSGFSNVGPRSPRNTSFTSSMTWGRRMNPPVSSIPPTSRARKDFARID*	939

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	636	652	-	-
	Rops2g03062	938	ProSitePatterns	Protein kinases ATP-binding region signature.	142	165	IPR017441	GO:0005524
	Rops2g03062	938	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	99	215	-	-
	Rops2g03062	938	Gene3D	Transferase(Phosphotransferase) domain 1	217	479	-	-
	Rops2g03062	938	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	259	271	IPR008271	GO:0004672\|GO:0006468
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	892	938	-	-
	Rops2g03062	938	SUPERFAMILY	Protein kinase-like (PK-like)	130	501	IPR011009	-
	Rops2g03062	938	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	74	481	-	-
	Rops2g03062	938	Gene3D	Phosphorylase Kinase; domain 1	101	216	-	-
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	894	925	-	-
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	660	736	-	-
	Rops2g03062	938	Pfam	Protein kinase domain	137	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	1	24	-	-
	Rops2g03062	938	CDD	PKc_YAK1	136	478	-	-
	Rops2g03062	938	SMART	serkin_6	136	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03062	938	ProSiteProfiles	Protein kinase domain profile.	136	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	636	764	-	-
	Rops2g03062	938	MobiDBLite	consensus disorder prediction	590	616	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03062	Rops-Chr2	55013207	55051877	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03062	135	365	MAP Kinase Gene Family	AT3G18040	34.146	2.53e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Rops2g03062		Pkinase	8.8e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03062	K18670		-	gmx:100792777	1697.56