LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g03052	ATGGGTAGCAGGGACATGGAAAAAACCCCAAAAGAGAATGAGTCTAAGACACCTCCAGCTACGTCACAGGAACATTCTTCAACAACTGGCACTGGAACAGTTAATCCTGACTGGTCTAACTTTCAGGCATATTCTCCTATGCCTCCACATGGGTACTTGGCATCAAGTCCTCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGCACCCCGCCACATCCCTATGTTGCAATGTATCCCCATGGCGGCATATATGCTCATCCATCCATTCCTCCGGGATCTTATCCTTATAGTCCTTTTGCCATGCCTTCTCCAAATGGTATTGCGGATGCTTCGGGAAATACTCCAGGCAGCGTTGAAGCTAATGTTAAGCCTCCTGAGGTGAAGGAAAAATTACCCATCAAAAGATCAAAAGAAAGTTTGGGTAGTTTGAATATGATTACAGGAAAAAATAATGAACATGGTAAAGCATCAGGGACAACTGCTAATGGAATTCATTCCAAAAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGAAAATTCCCAGAATGACTCTCAATTGAAATCCGGGGAGAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCATTGCATGCTACTCAAAATGGGGTGCTTACTACACCTCATACAGTTAACCAATGTATGTCTATGGTACCTATCTCTGCTGCTGGTGCTCTCACTGCAGTTCCTGGTCCCCCAACTAATTTAAATATAGGAATGGATTATTGGGGTGCACCAACTTCATCTGCCGTTCCTGCACTGCATGGAAAGGTTCCTTCTGCTGCCGTTGCTGGAGGGATGGCTAATGCTGGGTCACGTGATAGCGTTCATTCACAACTTTGGCTACAGGATGAAAGAGAACTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTGCGAAAGCAGGTTGAATGCGATGAACTAGCTCAGCGTTCTGAGGCTTTGAAAGAAGAAAATGCCTCTCTCCGATCAGAAGTGAGCCGGATCAGGAGTGAGTACGAGCAGCTACTCTCTGAGAATGCAGCCCTCAAGGAGAGACTTGGGGAGGTACCTGGGAACAAGGATCTAAGGTCGGGCCAGAATGATCAGCATGTGGGTAATGATACTCAACAGGGTGATCAGACAGGCTGA	1209	0.4624	MGSRDMEKTPKENESKTPPATSQEHSSTTGTGTVNPDWSNFQAYSPMPPHGYLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPYSPFAMPSPNGIADASGNTPGSVEANVKPPEVKEKLPIKRSKESLGSLNMITGKNNEHGKASGTTANGIHSKSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSLHATQNGVLTTPHTVNQCMSMVPISAAGALTAVPGPPTNLNIGMDYWGAPTSSAVPALHGKVPSAAVAGGMANAGSRDSVHSQLWLQDERELKRQRRKQSNRESARRSRLRKQVECDELAQRSEALKEENASLRSEVSRIRSEYEQLLSENAALKERLGEVPGNKDLRSGQNDQHVGNDTQQGDQTG*	403

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g03052	402	MobiDBLite	consensus disorder prediction	1	42	-	-
Rops2g03052	402	Pfam	bZIP transcription factor	304	366	IPR004827	GO:0003700\|GO:0006355
Rops2g03052	402	MobiDBLite	consensus disorder prediction	382	402	-	-
Rops2g03052	402	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	311	326	IPR004827	GO:0003700\|GO:0006355
Rops2g03052	402	MobiDBLite	consensus disorder prediction	15	42	-	-
Rops2g03052	402	SMART	brlzneu	304	368	IPR004827	GO:0003700\|GO:0006355
Rops2g03052	402	MobiDBLite	consensus disorder prediction	370	402	-	-
Rops2g03052	402	Gene3D	-	307	376	-	-
Rops2g03052	402	Coils	Coil	324	372	-	-
Rops2g03052	402	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	306	369	IPR004827	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g03052	Rops-Chr2	54843311	54863558	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g03052	1	377	bZIP Transcription Factor Family	AT2G35530	65.285	2.54e-166	470

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Rops2g03052		MFMR_assoc	4e-56	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g03052	K09060		-	gmx:100101912	648.277

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